Co-expression analysis

Gene ID PtpAffx.217592.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g57560: TCH4 (Touch 4) (HF=7e-6)
Module size 19 genes
NF 0.42
%ile 70.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8897.70.87PtpAffx.217592.1.S1_atpmrna32924hypothetical protein-7e-6At5g57560TCH4 (Touch 4)O.I.H.G.S.X.
0.5683.90.92Ptp.2653.1.S1_a_atCV261695hypothetical protein-1e-9At3g12490cysteine protease inhibitor, putative / cystatin, putativeO.I.H.G.S.X.
0.5178.90.89PtpAffx.211748.1.S1_s_atpmrna23020hypothetical protein-4e-1At3g18960transcriptional factor B3 family proteinO.I.H.G.S.X.
0.4975.70.89Ptp.3520.1.A1_s_atCV258205acyl:coa ligase-4e-20At3g48990AMP-dependent synthetase and ligase family proteinO.I.H.G.S.X.
0.4975.70.90PtpAffx.5825.1.A1_atCV270995hypothetical protein-2e-12At1g66150TMK1 (TRANSMEMBRANE KINASE 1)O.I.H.G.S.X.
0.4774.60.90PtpAffx.205458.1.S1_atpmrna10789hypothetical protein-1e-5At1g33080MATE efflux family proteinO.I.H.G.S.X.
0.4369.70.90PtpAffx.219959.1.S1_atpmrna36139hypothetical protein-3e-6At3g14360lipase class 3 family proteinO.I.H.G.S.X.
0.4268.60.89PtpAffx.74066.1.S1_atCN522685--9e-1At1g16080unknown proteinO.I.H.G.S.X.
0.4268.60.92PtpAffx.220998.1.S1_atpmrna37520hypothetical protein-9e-1At2g16940RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.4167.70.92PtpAffx.217312.1.S1_atpmrna32518hypothetical protein-8e-32At1g05055GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2)O.I.H.G.S.X.
0.4067.00.89PtpAffx.80539.1.A1_atBP936249hypothetical protein-2e-3At1g20900ESC (ESCAROLA)O.I.H.G.S.X.
0.3762.30.91PtpAffx.209078.1.S1_atpmrna17953hypothetical protein-6e-17At4g16170unknown proteinO.I.H.G.S.X.
0.3559.70.90PtpAffx.37856.1.A1_atCV236110hypothetical protein-8e-1At5g39110germin-like protein, putativeO.I.H.G.S.X.
0.3559.70.90PtpAffx.6692.2.A1_atCV240144hypothetical protein-7e-2At1g01490heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.3357.50.91PtpAffx.11064.3.S1_atCV245565hypothetical protein-7e-3At4g21620glycine-rich proteinO.I.H.G.S.X.
0.3357.50.92PtpAffx.202314.1.S1_x_atpmrna4632hypothetical protein-6e-12At1g02270endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family proteinO.I.H.G.S.X.
0.3255.20.90PtpAffx.1205.3.S1_s_atCV240384hypothetical protein-7e+0At5g23600tRNA 2'phosphotransferase, putativeO.I.H.G.S.X.
0.2950.50.89PtpAffx.25444.2.S1_s_atAJ779070hypothetical protein-3e-7At1g33110MATE efflux family proteinO.I.H.G.S.X.
0.2747.10.89Ptp.6101.2.S1_atCV237550--3e-16At1g77710-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.494.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.691.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM327281Populus balsamifera_20071015_Seedling_continuous_light_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.583.5GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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