Co-expression analysis

Gene ID PtpAffx.217511.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g02940: oxidoreductase, 2OG-Fe(II) oxygenase family protein (HF=9e-7)
Module size 6 genes
NF 0.27
%ile 48.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.89PtpAffx.217511.1.S1_atpmrna32803hypothetical protein-9e-7At4g02940oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.6086.00.91PtpAffx.201372.1.S1_x_atpmrna2709hypothetical protein-1e+0At5g39950ATTRX2 (THIOREDOXIN 2)O.I.H.G.S.X.
0.2034.60.91PtpAffx.139172.1.S1_atBP922379hypothetical protein-2e-5At3g59690IQD13 (IQ-domain 13)O.I.H.G.S.X.
0.2034.60.93PtpAffx.209390.1.S1_atpmrna18598hypothetical protein-9e-5At3g52270ATP binding / RNA polymerase II transcription factorO.I.H.G.S.X.
0.1932.70.92Ptp.2937.1.S1_s_atCV225687--5e-4At5g40370glutaredoxin, putativeO.I.H.G.S.X.
0.1321.60.92Ptp.6212.1.S1_s_atCX174523hypothetical protein-2e+1At5g02780In2-1 protein, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.797.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.494.0GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.490.4GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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