Co-expression analysis

Gene ID PtpAffx.217345.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g22030: F-box family protein (HF=2e-9)
Module size 8 genes
NF 0.53
%ile 83.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4875.40.88PtpAffx.217345.1.S1_s_atpmrna32563hypothetical protein-2e-9At4g22030F-box family proteinO.I.H.G.S.X.
0.7192.60.93PtpAffx.22638.1.S1_atDN503417hypothetical protein-4e-1At5g52870unknown proteinO.I.H.G.S.X.
0.5784.20.95PtpAffx.69940.1.A1_atCV238070--7e+0At5g11080ubiquitin family proteinO.I.H.G.S.X.
0.5380.50.92PtpAffx.208315.1.S1_atpmrna16536glycosyltransferase, CAZy family GT8-1e-13At1g70090LGT8 (GLUCOSYL TRANSFERASE FAMILY 8)O.I.H.G.S.X.
0.4673.70.95PtpAffx.142992.1.S1_s_atCA823082glycosyltransferase, CAZy family GT8-3e-4At1g70090LGT8 (GLUCOSYL TRANSFERASE FAMILY 8)O.I.H.G.S.X.
0.4369.70.93PtpAffx.74635.1.S1_atCX654131hypothetical protein-6e+0At5g08080SYP132 (SYNTAXIN OF PLANTS 132)O.I.H.G.S.X.
0.3863.70.94PtpAffx.85220.1.S1_atDN488269hypothetical protein-7e+0Atmg00120-O.I.H.G.S.X.
0.3661.60.93PtpAffx.204743.1.S1_atpmrna9337hypothetical protein-3e-1At5g46030unknown proteinO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.498.6GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.395.8GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.694.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.289.3GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

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