Co-expression analysis

Gene ID	PtpAffx.217345.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g22030: F-box family protein (HF=2e-9)
Module size	8 genes
NF	0.53
%ile	83.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	75.4	0.88	PtpAffx.217345.1.S1_s_at	pmrna32563	hypothetical protein	-	2e-9	At4g22030	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.93	PtpAffx.22638.1.S1_at	DN503417	hypothetical protein	-	4e-1	At5g52870	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.95	PtpAffx.69940.1.A1_at	CV238070	-	-	7e+0	At5g11080	ubiquitin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.92	PtpAffx.208315.1.S1_at	pmrna16536	glycosyltransferase, CAZy family GT8	-	1e-13	At1g70090	LGT8 (GLUCOSYL TRANSFERASE FAMILY 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.95	PtpAffx.142992.1.S1_s_at	CA823082	glycosyltransferase, CAZy family GT8	-	3e-4	At1g70090	LGT8 (GLUCOSYL TRANSFERASE FAMILY 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.93	PtpAffx.74635.1.S1_at	CX654131	hypothetical protein	-	6e+0	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.94	PtpAffx.85220.1.S1_at	DN488269	hypothetical protein	-	7e+0	Atmg00120	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.93	PtpAffx.204743.1.S1_at	pmrna9337	hypothetical protein	-	3e-1	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.4	98.6	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.2	89.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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