Co-expression analysis

Gene ID	PtpAffx.217331.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g05290: transcription factor (HF=1e+0)
Module size	6 genes
NF	0.28
%ile	50.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	74.6	0.91	PtpAffx.217331.1.S1_at	pmrna32547	hypothetical protein	-	1e+0	At1g05290	transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.92	PtpAffx.214817.1.S1_at	pmrna28680	hypothetical protein	-	1e-2	At5g53860	emb2737 (embryo defective 2737)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.90	PtpAffx.215276.1.S1_at	pmrna29369	-	-	2e+0	At4g20520	RNA binding / RNA-directed DNA polymerase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.91	PtpAffx.225864.1.S1_at	pmrna45498	hypothetical protein	-	1e+0	At4g16500	cysteine protease inhibitor family protein / cystatin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.91	PtpAffx.219841.1.S1_at	pmrna35990	hypothetical protein	-	2e+1	At3g26520	TIP2 (TONOPLAST INTRINSIC PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.90	PtpAffx.218039.1.S1_at	pmrna33551	hypothetical protein	-	1e-8	At2g37680	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.1	99.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1612769_at, orthologous to the query gene, PtpAffx.217331.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	93.7	1612769_at	At1g05290	hypothetical protein LOC100254355	-	1e+0	At1g14860	atnudt18 (Arabidopsis thaliana Nudix hydrolase homolog 18)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1607597_at	At1g05290	-	-	4e+0	Atmg00320	-	O.I.	H.G.	S.X.	Please select
0.41	58.7	1621753_at	At1g05290	-	-	2e-1	At1g74670	gibberellin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.37	51.7	1620603_at	At1g05290	hypothetical protein LOC100256346	-	2e-43	At3g55760	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1615000_at	At1g05290	-	-	4e+0	At2g25820	transcription factor	O.I.	H.G.	S.X.	Please select
0.33	45.7	1616937_at	At1g05290	hypothetical protein LOC100257035	-	1e+0	At2g24765	ARF3 (ADP-RIBOSYLATION FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1606472_at	At1g05290	-	-	8e-21	At3g29390	RIK (RS2-Interacting KH protein)	O.I.	H.G.	S.X.	Please select
0.28	37.7	1606814_at	At1g05290	hypothetical protein LOC100246736	-	1e-12	At5g60020	LAC17 (laccase 17)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1619304_s_at	At1g05290	hypothetical protein LOC100245623	-	1e-1	At5g39600	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	1609209_at	At1g05290	hypothetical protein LOC100248592	-	1e+0	At2g40780	RNA binding / translation initiation factor	O.I.	H.G.	S.X.	Please select
0.24	28.7	1613318_at	At1g05290	sucrose responsive element binding protein	-	2e-10	At4g37260	MYB73 (MYB DOMAIN PROTEIN 73)	O.I.	H.G.	S.X.	Please select
0.23	27.5	1606568_at	At1g05290	hypothetical protein LOC100250586	-	4e-12	At2g42620	MAX2 (MORE AXILLARY BRANCHES 2)	O.I.	H.G.	S.X.	Please select
0.22	25.6	1612231_at	At1g05290	-	-	7e-3	At3g18870	mitochondrial transcription termination factor-related / mTERF-related	O.I.	H.G.	S.X.	Please select
0.21	24.0	1610669_at	At1g05290	hypothetical protein LOC100259403	-	6e-2	At1g69825	-	O.I.	H.G.	S.X.	Please select
0.20	22.4	1621612_at	At1g05290	hypothetical protein LOC100243970	-	3e-36	At1g52150	ATHB-15	O.I.	H.G.	S.X.	Please select
0.18	19.4	1611497_at	At1g05290	hypothetical protein LOC100257576	-	1e+0	At5g23420	HMGB6	O.I.	H.G.	S.X.	Please select
0.17	18.2	1618570_at	At1g05290	hypothetical protein LOC100258393	-	7e-18	At5g16610	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	1607402_at	At1g05290	-	-	8e-11	At2g31530	EMB2289 (EMBRYO DEFECTIVE 2289)	O.I.	H.G.	S.X.	Please select
0.15	15.6	1616976_at	At1g05290	-	-	2e+0	At2g45240	MAP1A (METHIONINE AMINOPEPTIDASE 1A)	O.I.	H.G.	S.X.	Please select
0.13	13.3	1621302_at	At1g05290	-	-	5e-5	At1g17210	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.13	13.3	1622074_at	At1g05290	hypothetical protein LOC100252772	-	4e+0	At4g25300	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	1622006_at	At1g05290	hypothetical protein LOC100245246	-	4e-3	At1g33780	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	11.3	1616057_s_at	At1g05290	hypothetical protein LOC100248302	-	1e-11	At4g01120	GBF2 (G-BOX BINDING FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.11	11.3	1619739_at	At1g05290	hypothetical protein LOC100265726	-	1e-3	At2g39270	adenylate kinase family protein	O.I.	H.G.	S.X.	Please select
0.08	8.5	1613964_at	At1g05290	-	-	9e-1	At2g43910	thiol methyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.08	8.5	1620002_at	At1g05290	hypothetical protein LOC100247732	-	5e-32	At4g02590	UNE12 (unfertilized embryo sac 12)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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