Co-expression analysis

Gene ID PtpAffx.217198.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g22950: VPS24.1 (HF=1e-99)
Module size 6 genes
NF 0.51
%ile 81.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.96PtpAffx.217198.1.S1_atpmrna32362--1e-99At5g22950VPS24.1O.I.H.G.S.X.
0.6791.10.95PtpAffx.206372.1.S1_atpmrna12649hypothetical protein-1e-29At5g20610unknown proteinO.I.H.G.S.X.
0.6086.00.95PtpAffx.213830.1.S1_atpmrna26987hypothetical protein-2e-10At1g80570F-box family protein (FBL14)O.I.H.G.S.X.
0.6086.00.96PtpAffx.51307.1.S1_s_atCN549402hypothetical protein-1e-42At3g06810IBR3 (IBA-RESPONSE 3)O.I.H.G.S.X.
0.3255.20.96PtpAffx.141946.1.S1_s_atCN518150hypothetical protein-2e-23At2g22370unknown proteinO.I.H.G.S.X.
0.3052.00.95PtpAffx.158765.2.S1_s_atCF118958hypothetical protein-8e-35At3g52950CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.799.2GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
9.098.7GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.997.4GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.696.2GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.583.5GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.482.3GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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