Co-expression analysis

Gene ID	PtpAffx.217154.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g13857: unknown protein (HF=4e-1)
Module size	6 genes
NF	0.11
%ile	22.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.42	68.6	0.76	PtpAffx.217154.1.S1_at	pmrna32305	hypothetical protein	-	4e-1	At3g13857	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.79	PtpAffx.210062.1.S1_at	pmrna19820	hypothetical protein	-	3e-1	At5g54640	RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.77	PtpAffx.99692.1.S1_at	BI124771	-	-	1e+0	Atcg00780	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.77	PtpAffx.200117.1.S1_at	pmrna217	hypothetical protein	-	2e+0	At4g17280	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.78	PtpAffx.65139.1.A1_at	CK093880	-	-	7e-2	At4g08025	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.77	PtpAffx.217979.1.S1_s_at	pmrna33471	hypothetical protein	-	1e+1	At5g36900	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.0	98.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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