Co-expression analysis

Gene ID	PtpAffx.217123.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g49120: senescence-associated protein-related (HF=2e-1)
Module size	6 genes
NF	0.15
%ile	29.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.93	PtpAffx.217123.1.S1_s_at	pmrna32266	hypothetical protein	-	2e-1	At5g49120	senescence-associated protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	PtpAffx.206245.1.S1_at	pmrna12391	hypothetical protein	-	4e-93	At5g02250	EMB2730 (EMBRYO DEFECTIVE 2730)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.94	PtpAffx.211281.1.S1_at	pmrna22128	hypothetical protein	-	2e-1	At5g57920	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.94	PtpAffx.210235.1.S1_at	pmrna20149	hypothetical protein	-	0	At5g53170	FTSH11 (FtsH protease 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.93	PtpAffx.204090.1.S1_at	pmrna8074	hypothetical protein	-	5e-17	At5g39940	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.93	PtpAffx.135096.2.S1_a_at	BI122655	hypothetical protein	-	8e-17	At4g02790	GTP-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.0	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8	92.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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