Co-expression analysis

Gene ID	PtpAffx.216840.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g20740: invertase/pectin methylesterase inhibitor family protein (HF=8e+0)
Module size	11 genes
NF	0.31
%ile	55.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	80.5	0.78	PtpAffx.216840.1.S1_at	pmrna31880	hypothetical protein	-	8e+0	At5g20740	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.81	PtpAffx.9803.1.S1_at	DN499056	-	-	1e+0	At1g53950	ubiquitin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.83	PtpAffx.119306.1.S1_at	DN484066	-	-	1e-1	At1g47765	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.80	PtpAffx.224478.1.S1_at	pmrna43054	hypothetical protein	-	2e-1	At1g36095	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.87	PtpAffx.215988.1.S1_at	pmrna30484	hypothetical protein	-	1e+0	At5g50090	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.86	PtpAffx.218774.1.S1_at	pmrna34502	hypothetical protein	-	9e-2	At1g26799	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.81	PtpAffx.107625.1.A1_at	CV273577	-	-	7e-3	At2g33730	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.86	Ptp.7288.1.S1_at	BU895370	hypothetical protein	-	2e-1	At5g62550	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.84	PtpAffx.99481.1.S1_at	DN492307	-	-	5e+0	At3g10060	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.83	PtpAffx.202884.1.S1_x_at	pmrna5699	hypothetical protein	-	2e-67	Atcg01280	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.82	PtpAffx.221402.1.S1_at	pmrna38275	hypothetical protein	-	5e-131	Atmg00650	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	96.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7	91.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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