Co-expression analysis

Gene ID PtpAffx.216821.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g66280: BGLU22 (HF=3e-8)
Module size 6 genes
NF 0.39
%ile 66.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.92PtpAffx.216821.1.S1_s_atpmrna31856hypothetical protein-3e-8At1g66280BGLU22O.I.H.G.S.X.
0.8096.00.94PtpAffx.204078.1.S1_s_atpmrna8052hypothetical protein-4e-5At5g42260BGLU12 (BETA GLUCOSIDASE 12)O.I.H.G.S.X.
0.6791.10.92PtpAffx.204075.1.S1_s_atpmrna8049hypothetical protein-8e-3At2g44450BGLU15 (BETA GLUCOSIDASE 15)O.I.H.G.S.X.
0.3661.60.94PtpAffx.5280.1.S1_atCV254832--5e+0At5g44785OSB3 (ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 3)O.I.H.G.S.X.
0.2747.10.94PtpAffx.37283.1.S1_atBU884744--2e+0At5g53950CUC2 (CUP-SHAPED COTYLEDON 2)O.I.H.G.S.X.
0.1016.30.92Ptp.3786.1.S1_atCX655023hypothetical protein-1e-14At4g23550WRKY29O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.597.1GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.696.2GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.193.2GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327281Populus balsamifera_20071015_Seedling_continuous_light_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327359Populus balsamifera_20071015_Seedling_continuous_light_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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