Co-expression analysis

Gene ID PtpAffx.216718.1.S1_x_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g49900: catalytic/ glucosylceramidase (HF=5e-34)
Module size 6 genes
NF 0.60
%ile 90.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.89PtpAffx.216718.1.S1_x_atpmrna31678hypothetical protein-5e-34At5g49900catalytic/ glucosylceramidaseO.I.H.G.S.X.
0.7192.60.88PtpAffx.209873.1.S1_atpmrna19451hypothetical protein-1e+0At1g29730ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.6791.10.87Ptp.6068.1.S1_s_atDN486901hypothetical protein-2e-38At5g49900catalytic/ glucosylceramidaseO.I.H.G.S.X.
0.5683.90.89PtpAffx.218408.1.S1_s_atpmrna34013hypothetical protein-7e-1At3g61950basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.5078.60.89PtpAffx.225391.1.S1_s_atpmrna44712hypothetical protein-7e-3At3g28690protein kinase, putativeO.I.H.G.S.X.
0.4471.90.89PtpAffx.5631.1.A1_atCV241367--3e-1At5g39630vesicle transport v-SNARE family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.393.7GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.892.1GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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