CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.216610.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g20360: binding / catalytic/ coenzyme binding (HF=9e-1)

Module size 35 genes

NF 0.09

%ile 19.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 0.74 PtpAffx.216610.1.S1_s_at pmrna31513 hypothetical protein - 9e-1 At2g20360 binding / catalytic/ coenzyme binding O.I. H.G. S.X.
0.31 53.7 0.84 PtpAffx.213332.1.S1_at pmrna26081 - - 5e+0 At5g02150 binding O.I. H.G. S.X.
0.30 52.0 0.76 PtpAffx.223739.1.S1_s_at pmrna41897 - - 3e-1 At1g01610 GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4) O.I. H.G. S.X.
0.26 45.2 0.80 PtpAffx.205296.1.S1_at pmrna10501 hypothetical protein - 2e-1 At5g25240 - O.I. H.G. S.X.
0.24 41.8 0.84 Ptp.505.1.A1_at CK087842 - - 8e-1 At5g65030 unknown protein O.I. H.G. S.X.
0.20 34.6 0.80 PtpAffx.215390.1.S1_x_at pmrna29549 hypothetical protein - 1e+0 At1g72600 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.19 32.7 0.85 PtpAffx.113916.1.A1_at CV279047 - - 2e+0 At1g12520 ATCCS (COPPER CHAPERONE FOR SOD1) O.I. H.G. S.X.
0.18 30.8 0.86 PtpAffx.225346.1.S1_at pmrna44632 hypothetical protein - 2e+0 At5g18690 AGP25 (ARABINOGALACTAN PROTEINS 25) O.I. H.G. S.X.
0.17 29.1 0.81 PtpAffx.210953.1.S1_at pmrna21520 hypothetical protein - 2e+0 At4g30320 allergen V5/Tpx-1-related family protein O.I. H.G. S.X.
0.17 29.1 0.82 PtpAffx.200788.1.S1_at pmrna1523 hypothetical protein - 2e-1 At3g52525 OFP6 (OVATE FAMILY PROTEIN 6) O.I. H.G. S.X.
0.17 29.1 0.85 PtpAffx.141173.1.A1_at CV229185 - - 2e-1 At2g12170 unknown protein O.I. H.G. S.X.
0.16 26.9 0.87 PtpAffx.205072.1.S1_at pmrna10050 hypothetical protein - 9e-1 At3g26850 - O.I. H.G. S.X.
0.16 26.9 0.83 PtpAffx.30708.1.A1_at CV263949 - - 4e+0 At5g26617 - O.I. H.G. S.X.
0.15 25.3 0.85 PtpAffx.58520.1.S1_at CK091727 hypothetical protein - 1e-18 At3g16630 KINESIN-13A O.I. H.G. S.X.
0.13 21.6 0.86 PtpAffx.222391.1.S1_at pmrna39755 hypothetical protein - 1e+0 At3g04620 nucleic acid binding O.I. H.G. S.X.
0.11 18.1 0.84 PtpAffx.220708.1.S1_at pmrna37123 hypothetical protein - 3e+0 At3g48490 unknown protein O.I. H.G. S.X.
0.10 16.3 0.87 Ptp.2282.3.A1_at CV238349 - - 2e-4 At1g30910 molybdenum cofactor sulfurase family protein O.I. H.G. S.X.
0.10 16.3 0.81 PtpAffx.92099.2.S1_s_at DN498665 AP2/ERF domain-containing transcription factor - 4e-1 At1g51970 unknown protein O.I. H.G. S.X.
0.10 16.3 0.87 PtpAffx.202262.1.S1_at pmrna4532 hypothetical protein - 4e-5 At3g61740 SDG14 (SET DOMAIN PROTEIN 14) O.I. H.G. S.X.
0.10 16.3 0.83 PtpAffx.206952.1.S1_at pmrna13784 hypothetical protein - 1e+0 At3g54130 josephin family protein O.I. H.G. S.X.
0.10 16.3 0.85 PtpAffx.24647.1.A1_at CV252333 - - 9e-1 At5g21274 CAM6 (CALMODULIN 6) O.I. H.G. S.X.
0.08 12.9 0.85 PtpAffx.208514.1.S1_at pmrna16896 hypothetical protein - 2e+0 At4g27657 unknown protein O.I. H.G. S.X.
0.07 11.6 0.88 PtpAffx.217296.1.S1_at pmrna32498 hypothetical protein - 1e+0 At2g27130 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.07 11.6 0.87 Ptp.4086.2.S1_at DN500174 - - 5e-1 At1g20690 - O.I. H.G. S.X.
0.07 11.6 0.84 PtpAffx.200163.1.S1_at pmrna303 GRAS domain protein - 6e-1 At1g54215 proline-rich family protein O.I. H.G. S.X.
0.06 9.8 0.81 PtpAffx.223726.1.S1_at pmrna41875 - - 8e+0 At5g51440 23.5 kDa mitochondrial small heat shock protein (HSP23.5-M) O.I. H.G. S.X.
0.06 9.8 0.84 PtpAffx.205603.1.S1_at pmrna11057 GRAS family transcription factor - 7e-1 At4g38540 monooxygenase, putative (MO2) O.I. H.G. S.X.
0.05 8.3 0.85 PtpAffx.63601.1.A1_at CV233848 - - 3e+1 At4g24644 unknown protein O.I. H.G. S.X.
0.05 8.3 0.89 PtpAffx.218247.1.S1_s_at pmrna33799 hypothetical protein - 2e+0 At3g43682 unknown protein O.I. H.G. S.X.
0.04 6.9 0.78 PtpAffx.224814.1.S1_at pmrna43680 hypothetical protein - 2e-4 At4g18750 DOT4 (DEFECTIVELY ORGANIZED TRIBUTARIES 4) O.I. H.G. S.X.
0.03 5.2 0.83 PtpAffx.20350.1.A1_at CK088570 - - 4e-5 At4g38220 aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative O.I. H.G. S.X.
0.03 5.2 0.84 Ptp.7232.1.S1_at DN492685 - - 2e+0 At3g23580 RNR2A (RIBONUCLEOTIDE REDUCTASE 2A) O.I. H.G. S.X.
0.02 3.6 0.79 PtpAffx.29111.1.A1_at DN488221 AP2 domain-containing transcription factor - 4e+0 At4g32260 ATP synthase family O.I. H.G. S.X.
0.02 3.6 0.85 PtpAffx.201409.1.S1_at pmrna2779 hypothetical protein - 4e-1 At5g56530 unknown protein O.I. H.G. S.X.
0.02 3.6 0.84 PtpAffx.211506.1.S1_s_at pmrna22547 AP2/ERF domain-containing transcription factor - 5e-4 At5g19790 RAP2.11 (related to AP2 11) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.97	99.9	0.74	PtpAffx.216610.1.S1_s_at	pmrna31513	hypothetical protein	-	9e-1	At2g20360	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.
0.31	53.7	0.84	PtpAffx.213332.1.S1_at	pmrna26081	-	-	5e+0	At5g02150	binding	O.I.	H.G.	S.X.
0.30	52.0	0.76	PtpAffx.223739.1.S1_s_at	pmrna41897	-	-	3e-1	At1g01610	GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4)	O.I.	H.G.	S.X.
0.26	45.2	0.80	PtpAffx.205296.1.S1_at	pmrna10501	hypothetical protein	-	2e-1	At5g25240	-	O.I.	H.G.	S.X.
0.24	41.8	0.84	Ptp.505.1.A1_at	CK087842	-	-	8e-1	At5g65030	unknown protein	O.I.	H.G.	S.X.
0.20	34.6	0.80	PtpAffx.215390.1.S1_x_at	pmrna29549	hypothetical protein	-	1e+0	At1g72600	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.19	32.7	0.85	PtpAffx.113916.1.A1_at	CV279047	-	-	2e+0	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	O.I.	H.G.	S.X.
0.18	30.8	0.86	PtpAffx.225346.1.S1_at	pmrna44632	hypothetical protein	-	2e+0	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	O.I.	H.G.	S.X.
0.17	29.1	0.81	PtpAffx.210953.1.S1_at	pmrna21520	hypothetical protein	-	2e+0	At4g30320	allergen V5/Tpx-1-related family protein	O.I.	H.G.	S.X.
0.17	29.1	0.82	PtpAffx.200788.1.S1_at	pmrna1523	hypothetical protein	-	2e-1	At3g52525	OFP6 (OVATE FAMILY PROTEIN 6)	O.I.	H.G.	S.X.
0.17	29.1	0.85	PtpAffx.141173.1.A1_at	CV229185	-	-	2e-1	At2g12170	unknown protein	O.I.	H.G.	S.X.
0.16	26.9	0.87	PtpAffx.205072.1.S1_at	pmrna10050	hypothetical protein	-	9e-1	At3g26850	-	O.I.	H.G.	S.X.
0.16	26.9	0.83	PtpAffx.30708.1.A1_at	CV263949	-	-	4e+0	At5g26617	-	O.I.	H.G.	S.X.
0.15	25.3	0.85	PtpAffx.58520.1.S1_at	CK091727	hypothetical protein	-	1e-18	At3g16630	KINESIN-13A	O.I.	H.G.	S.X.
0.13	21.6	0.86	PtpAffx.222391.1.S1_at	pmrna39755	hypothetical protein	-	1e+0	At3g04620	nucleic acid binding	O.I.	H.G.	S.X.
0.11	18.1	0.84	PtpAffx.220708.1.S1_at	pmrna37123	hypothetical protein	-	3e+0	At3g48490	unknown protein	O.I.	H.G.	S.X.
0.10	16.3	0.87	Ptp.2282.3.A1_at	CV238349	-	-	2e-4	At1g30910	molybdenum cofactor sulfurase family protein	O.I.	H.G.	S.X.
0.10	16.3	0.81	PtpAffx.92099.2.S1_s_at	DN498665	AP2/ERF domain-containing transcription factor	-	4e-1	At1g51970	unknown protein	O.I.	H.G.	S.X.
0.10	16.3	0.87	PtpAffx.202262.1.S1_at	pmrna4532	hypothetical protein	-	4e-5	At3g61740	SDG14 (SET DOMAIN PROTEIN 14)	O.I.	H.G.	S.X.
0.10	16.3	0.83	PtpAffx.206952.1.S1_at	pmrna13784	hypothetical protein	-	1e+0	At3g54130	josephin family protein	O.I.	H.G.	S.X.
0.10	16.3	0.85	PtpAffx.24647.1.A1_at	CV252333	-	-	9e-1	At5g21274	CAM6 (CALMODULIN 6)	O.I.	H.G.	S.X.
0.08	12.9	0.85	PtpAffx.208514.1.S1_at	pmrna16896	hypothetical protein	-	2e+0	At4g27657	unknown protein	O.I.	H.G.	S.X.
0.07	11.6	0.88	PtpAffx.217296.1.S1_at	pmrna32498	hypothetical protein	-	1e+0	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.07	11.6	0.87	Ptp.4086.2.S1_at	DN500174	-	-	5e-1	At1g20690	-	O.I.	H.G.	S.X.
0.07	11.6	0.84	PtpAffx.200163.1.S1_at	pmrna303	GRAS domain protein	-	6e-1	At1g54215	proline-rich family protein	O.I.	H.G.	S.X.
0.06	9.8	0.81	PtpAffx.223726.1.S1_at	pmrna41875	-	-	8e+0	At5g51440	23.5 kDa mitochondrial small heat shock protein (HSP23.5-M)	O.I.	H.G.	S.X.
0.06	9.8	0.84	PtpAffx.205603.1.S1_at	pmrna11057	GRAS family transcription factor	-	7e-1	At4g38540	monooxygenase, putative (MO2)	O.I.	H.G.	S.X.
0.05	8.3	0.85	PtpAffx.63601.1.A1_at	CV233848	-	-	3e+1	At4g24644	unknown protein	O.I.	H.G.	S.X.
0.05	8.3	0.89	PtpAffx.218247.1.S1_s_at	pmrna33799	hypothetical protein	-	2e+0	At3g43682	unknown protein	O.I.	H.G.	S.X.
0.04	6.9	0.78	PtpAffx.224814.1.S1_at	pmrna43680	hypothetical protein	-	2e-4	At4g18750	DOT4 (DEFECTIVELY ORGANIZED TRIBUTARIES 4)	O.I.	H.G.	S.X.
0.03	5.2	0.83	PtpAffx.20350.1.A1_at	CK088570	-	-	4e-5	At4g38220	aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative	O.I.	H.G.	S.X.
0.03	5.2	0.84	Ptp.7232.1.S1_at	DN492685	-	-	2e+0	At3g23580	RNR2A (RIBONUCLEOTIDE REDUCTASE 2A)	O.I.	H.G.	S.X.
0.02	3.6	0.79	PtpAffx.29111.1.A1_at	DN488221	AP2 domain-containing transcription factor	-	4e+0	At4g32260	ATP synthase family	O.I.	H.G.	S.X.
0.02	3.6	0.85	PtpAffx.201409.1.S1_at	pmrna2779	hypothetical protein	-	4e-1	At5g56530	unknown protein	O.I.	H.G.	S.X.
0.02	3.6	0.84	PtpAffx.211506.1.S1_s_at	pmrna22547	AP2/ERF domain-containing transcription factor	-	5e-4	At5g19790	RAP2.11 (related to AP2 11)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.7 97.3 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4 90.4 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.7	97.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	PtpAffx.216610.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g20360: binding / catalytic/ coenzyme binding (HF=9e-1)
Module size	35 genes
NF	0.09
%ile	19.4

Co-expression analysis

Gene ID PtpAffx.216610.1.S1_s_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At2g20360: binding / catalytic/ coenzyme binding (HF=9e-1) Module size 35 genes NF 0.09 %ile 19.4

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.216610.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g20360: binding / catalytic/ coenzyme binding (HF=9e-1)

Module size 35 genes

NF 0.09

%ile 19.4

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays