Co-expression analysis

Gene ID	PtpAffx.216470.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g05110: cysteine protease inhibitor, putative / cystatin, putative (HF=6e-24)
Module size	8 genes
NF	0.18
%ile	33.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.92	PtpAffx.216470.1.S1_s_at	pmrna31254	hypothetical protein	-	6e-24	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.92	PtpAffx.145335.1.A1_at	BP935822	hypothetical protein	-	4e+0	At4g15620	integral membrane family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.96	PtpAffx.1941.1.S1_a_at	CK089676	-	-	6e-1	At3g24800	PRT1 (PROTEOLYSIS 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.96	Ptp.4563.1.S1_at	DN490347	hypothetical protein	-	2e-19	At4g39100	SHL1 (short life)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.95	PtpAffx.117819.1.S1_at	CK095818	hypothetical protein	-	2e-1	At4g02800	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	PtpAffx.56274.1.S1_at	CV271474	hypothetical protein	-	1e+0	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.92	PtpAffx.200899.1.S1_at	pmrna1767	hypothetical protein	-	2e-3	At4g14590	emb2739 (embryo defective 2739)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.92	PtpAffx.151516.1.A1_at	DN492922	hypothetical protein	-	2e-30	At3g13530	MAPKKK7	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	95.9	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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