Co-expression analysis

Gene ID PtpAffx.216450.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to Atcg00500: - (HF=2e-4)
Module size 7 genes
NF 0.37
%ile 64.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.94PtpAffx.216450.1.S1_atpmrna31230hypothetical protein-2e-4Atcg00500-O.I.H.G.S.X.
0.5784.20.92PtpAffx.6054.1.S1_atCA821641--7e-9At2g12905unknown proteinO.I.H.G.S.X.
0.4471.90.94PtpAffx.27285.1.A1_s_atCA923948hypothetical protein-9e-58At1g80670transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.2950.50.95Ptp.6512.1.S1_s_atCK112728--2e-92Atcg00790-O.I.H.G.S.X.
0.2950.50.95PtpAffx.216450.1.S1_s_atpmrna31230hypothetical protein-2e-4Atcg00500-O.I.H.G.S.X.
0.2238.30.94PtpAffx.28247.1.A1_atCV243278hypothetical protein-2e-65At3g23940dehydratase familyO.I.H.G.S.X.
0.1525.30.94PtpAffx.121047.1.A1_atCV256059hypothetical protein-2e-15At1g03687-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.289.3GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.583.5GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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