Co-expression analysis

Gene ID	PtpAffx.216396.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g36180: scpl1 (serine carboxypeptidase-like 1) (HF=1e-14)
Module size	7 genes
NF	0.10
%ile	19.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.3	0.88	PtpAffx.216396.1.S1_at	pmrna31154	hypothetical protein	-	1e-14	At5g36180	scpl1 (serine carboxypeptidase-like 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.89	PtpAffx.215706.1.S1_x_at	pmrna30058	hypothetical protein	-	8e-1	At5g38060	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.90	PtpAffx.133666.1.A1_at	CV267569	hypothetical protein	-	5e-4	At2g39795	mitochondrial glycoprotein family protein / MAM33 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.89	PtpAffx.202356.1.S1_at	pmrna4733	hypothetical protein	-	7e-1	At4g16141	sequence-specific DNA binding / transcription factor/ zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.92	PtpAffx.204974.1.S1_at	pmrna9837	hypothetical protein	-	4e-5	At3g61390	U-box domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.89	PtpAffx.215516.1.S1_at	pmrna29759	f-box family protein	-	3e-23	At1g28310	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.89	PtpAffx.120657.1.A1_at	CV270560	-	-	3e-1	At2g40440	BTB/POZ domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.0	98.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.4	94.0	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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