Co-expression analysis

Gene ID PtpAffx.216396.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g36180: scpl1 (serine carboxypeptidase-like 1) (HF=1e-14)
Module size 7 genes
NF 0.10
%ile 19.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9299.30.88PtpAffx.216396.1.S1_atpmrna31154hypothetical protein-1e-14At5g36180scpl1 (serine carboxypeptidase-like 1)O.I.H.G.S.X.
0.2034.60.89PtpAffx.215706.1.S1_x_atpmrna30058hypothetical protein-8e-1At5g38060unknown proteinO.I.H.G.S.X.
0.1932.70.90PtpAffx.133666.1.A1_atCV267569hypothetical protein-5e-4At2g39795mitochondrial glycoprotein family protein / MAM33 family proteinO.I.H.G.S.X.
0.1321.60.89PtpAffx.202356.1.S1_atpmrna4733hypothetical protein-7e-1At4g16141sequence-specific DNA binding / transcription factor/ zinc ion bindingO.I.H.G.S.X.
0.0711.60.92PtpAffx.204974.1.S1_atpmrna9837hypothetical protein-4e-5At3g61390U-box domain-containing proteinO.I.H.G.S.X.
0.058.30.89PtpAffx.215516.1.S1_atpmrna29759f-box family protein-3e-23At1g28310Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.046.90.89PtpAffx.120657.1.A1_atCV270560--3e-1At2g40440BTB/POZ domain-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.098.0GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.395.8GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
3.494.0GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.092.9GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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