Co-expression analysis

Gene ID	PtpAffx.216324.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g05553: zinc knuckle (CCHC-type) family protein (HF=4e+0)
Module size	6 genes
NF	0.69
%ile	95.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.94	PtpAffx.216324.1.S1_x_at	pmrna31034	hypothetical protein	-	4e+0	At4g05553	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.93	PtpAffx.7770.2.S1_at	DN488472	-	-	6e+0	At4g12090	cornichon family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.94	Ptp.3447.1.A1_at	DN492951	-	-	2e+0	At3g06000	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.94	PtpAffx.144822.1.S1_at	DN500556	-	-	1e+0	At5g66650	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.94	PtpAffx.214797.1.S1_at	pmrna28647	hypothetical protein	-	3e-34	At5g13650	elongation factor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.93	PtpAffx.7770.1.A1_at	CA934754	-	-	4e+0	At1g58460	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.2	99.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7	94.7	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1612123_at, orthologous to the query gene, PtpAffx.216324.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	79.4	1612123_at	At4g05553	hypothetical protein LOC100241410	-	3e-1	At1g14410	WHY1 (WHIRLY 1)	O.I.	H.G.	S.X.	Please select
0.69	88.3	1606836_at	At4g05553	hypothetical protein LOC100260106	-	1e-20	At3g09770	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1608031_at	At4g05553	hypothetical protein LOC100253247	-	4e-20	At5g03540	ATEXO70A1 (exocyst subunit EXO70 family protein A1)	O.I.	H.G.	S.X.	Please select
0.67	87.9	1613034_at	At4g05553	hypothetical protein LOC100248519	-	1e-1	At1g09870	histidine acid phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.65	85.0	1609101_at	At4g05553	hypothetical protein LOC100252214	-	9e-31	At5g34850	PAP26 (PURPLE ACID PHOSPHATASE 26)	O.I.	H.G.	S.X.	Please select
0.64	84.7	1613313_at	At4g05553	hypothetical protein LOC100245611	-	1e-16	At3g11830	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.61	83.2	1612267_at	At4g05553	similar to NADP-specific isocitrate dehydrogenase	-	9e-65	At5g14590	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.58	79.8	1608442_at	At4g05553	ornithine aminotransferase	-	8e-60	At5g46180	delta-OAT	O.I.	H.G.	S.X.	Please select
0.56	79.4	1611198_s_at	At4g05553	nhx1 antiporter	-	4e-1	At4g12060	Clp amino terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	1612773_at	At4g05553	hypothetical protein LOC100264940	-	5e-15	At5g27410	aminotransferase class IV family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1621259_at	At4g05553	hypothetical protein LOC100256240	-	2e-33	At5g04740	ACT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	1610742_at	At4g05553	similar to acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative	-	1e-20	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please select
0.47	67.7	1618344_at	At4g05553	hypothetical protein LOC100266422	-	2e-5	At1g51160	synbindin, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	1617082_a_at	At4g05553	-	-	1e-20	At3g09770	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1613813_a_at	At4g05553	-	-	3e-11	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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