Co-expression analysis

Gene ID	PtpAffx.216324.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g05553: zinc knuckle (CCHC-type) family protein (HF=4e+0)
Module size	6 genes
NF	0.69
%ile	95.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.94	PtpAffx.216324.1.S1_x_at	pmrna31034	hypothetical protein	-	4e+0	At4g05553	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.93	PtpAffx.7770.2.S1_at	DN488472	-	-	6e+0	At4g12090	cornichon family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.94	Ptp.3447.1.A1_at	DN492951	-	-	2e+0	At3g06000	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.94	PtpAffx.144822.1.S1_at	DN500556	-	-	1e+0	At5g66650	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.94	PtpAffx.214797.1.S1_at	pmrna28647	hypothetical protein	-	3e-34	At5g13650	elongation factor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.93	PtpAffx.7770.1.A1_at	CA934754	-	-	4e+0	At1g58460	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.2	99.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7	94.7	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.112472.1.S1_at, orthologous to the query gene, PtpAffx.216324.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.112472.1.S1_at	At4g05553	-	-	5e-1	At3g20970	NFU4	O.I.	H.G.	S.X.	Please select
0.04	5.8	TaAffx.78717.1.S1_at	At4g05553	-	-	3e+0	At2g24570	WRKY17	O.I.	H.G.	S.X.	Please select
0.02	3.6	Ta.25899.1.A1_at	At4g05553	-	-	5e+0	At5g47830	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	TaAffx.112158.1.S1_x_at	At4g05553	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	Ta.17055.1.S1_x_at	At4g05553	-	-	2e-11	At1g27330	-	O.I.	H.G.	S.X.	Please select
0.00	0.7	Ta.9784.3.S1_x_at	At4g05553	-	-	4e+0	At2g22630	AGL17 (agamous-like 17)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage