CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.216324.1.S1_x_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g05553: zinc knuckle (CCHC-type) family protein (HF=4e+0)

Module size 6 genes

NF 0.69

%ile 95.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.94 PtpAffx.216324.1.S1_x_at pmrna31034 hypothetical protein - 4e+0 At4g05553 zinc knuckle (CCHC-type) family protein O.I. H.G. S.X.
0.77 94.9 0.93 PtpAffx.7770.2.S1_at DN488472 - - 6e+0 At4g12090 cornichon family protein O.I. H.G. S.X.
0.77 94.9 0.94 Ptp.3447.1.A1_at DN492951 - - 2e+0 At3g06000 leucine-rich repeat family protein O.I. H.G. S.X.
0.63 88.1 0.94 PtpAffx.144822.1.S1_at DN500556 - - 1e+0 At5g66650 unknown protein O.I. H.G. S.X.
0.59 84.9 0.94 PtpAffx.214797.1.S1_at pmrna28647 hypothetical protein - 3e-34 At5g13650 elongation factor family protein O.I. H.G. S.X.
0.44 71.9 0.93 PtpAffx.7770.1.A1_at CA934754 - - 4e+0 At1g58460 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.2 99.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.3 95.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9 95.1 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7 94.7 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the rice gene, Os03g0774200, orthologous to the query gene, PtpAffx.216324.1.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.58 77.0 Os03g0774200 At4g05553 - NADH-ubiquinone oxidoreductase subunit 8 (EC1.6.5.3) 2e-71 At1g79010 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) O.I. H.G. S.X.
0.76 92.2 Os04g0398500 At4g05553 - Ubiquinol-cytochrome c reductase iron-sulfursubunit, mitochondrial precursor (EC 1.10.2.2) (Rieskeiron-sulfur protein) (RISP) 7e-10 At5g13430 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative O.I. H.G. S.X.
0.76 92.2 Os03g0390400 At4g05553 - Cytochrome c oxidase subunit 6b (OSJNBa0029H02.1protein) (OSJNBa0067K08.22 protein) 7e-37 At1g22450 COX6B (CYTOCHROME C OXIDASE 6B) O.I. H.G. S.X.
0.75 91.9 Os07g0585800 At4g05553 - NADH-ubiquinone oxidoreductase 18 kDa subunit (EC1.6.5.3) (EC 1.6.99.3) (Complex I-18KD) (CI-18KD)(Fragment) 7e-9 At5g67590 FRO1 (FROSTBITE1) O.I. H.G. S.X.
0.71 89.6 Os12g0169700 At4g05553 - Ferripyochelin-binding protein-like 8e-16 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) O.I. H.G. S.X.
0.67 87.2 Os04g0418000 At4g05553 - Conserved hypothetical protein 6e-1 At1g47420 - O.I. H.G. S.X.
0.67 87.2 Os07g0222800 At4g05553 - Acyl carrier protein, mitochondrial precursor(ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit)(MtACP-1) 1e-1 At2g44620 MTACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1) O.I. H.G. S.X.
0.64 83.4 Os05g0301700 At4g05553 - Cytochrome c1 (Fragment) 5e-79 At3g27240 cytochrome c1, putative O.I. H.G. S.X.
0.63 82.7 Os05g0553000 At4g05553 - ATP synthase beta chain, mitochondrial precursor(EC 3.6.3.14) 0 At5g08670 ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism O.I. H.G. S.X.
0.60 79.7 Os03g0713400 At4g05553 - NADH-ubiquinone oxidoreductase 75 kDa subunit,mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)(Complex I-75KD) (CI-75KD) (76 kDa mitochondrial complexI subunit) 7e-92 At5g37510 EMB1467 (embryo defective 1467) O.I. H.G. S.X.
0.57 77.0 Os01g0685800 At4g05553 - ATP synthase beta chain, mitochondrial precursor(EC 3.6.3.14) 6e-156 At5g08680 ATP synthase beta chain, mitochondrial, putative O.I. H.G. S.X.
0.50 68.0 Os07g0495200 At4g05553 - ATP synthase delta' chain, mitochondrial precursor(EC 3.6.3.14) 1e-1 At5g47030 ATP synthase delta' chain, mitochondrial O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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