CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.216324.1.S1_x_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g05553: zinc knuckle (CCHC-type) family protein (HF=4e+0)

Module size 6 genes

NF 0.69

%ile 95.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.94 PtpAffx.216324.1.S1_x_at pmrna31034 hypothetical protein - 4e+0 At4g05553 zinc knuckle (CCHC-type) family protein O.I. H.G. S.X.
0.77 94.9 0.93 PtpAffx.7770.2.S1_at DN488472 - - 6e+0 At4g12090 cornichon family protein O.I. H.G. S.X.
0.77 94.9 0.94 Ptp.3447.1.A1_at DN492951 - - 2e+0 At3g06000 leucine-rich repeat family protein O.I. H.G. S.X.
0.63 88.1 0.94 PtpAffx.144822.1.S1_at DN500556 - - 1e+0 At5g66650 unknown protein O.I. H.G. S.X.
0.59 84.9 0.94 PtpAffx.214797.1.S1_at pmrna28647 hypothetical protein - 3e-34 At5g13650 elongation factor family protein O.I. H.G. S.X.
0.44 71.9 0.93 PtpAffx.7770.1.A1_at CA934754 - - 4e+0 At1g58460 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.2 99.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.3 95.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9 95.1 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7 94.7 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the barley gene, HF17H18r_s_at, orthologous to the query gene, PtpAffx.216324.1.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 77.3 HF17H18r_s_at At4g05553 - - 3e+0 At4g03410 peroxisomal membrane protein-related O.I. H.G. S.X.
0.63 80.3 Contig4260_at At4g05553 - - 5e-2 At4g37980 ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) O.I. H.G. S.X.
0.55 72.0 EBem09_SQ001_L06_s_at At4g05553 - - 5e-1 At5g16470 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.53 69.7 Contig2783_s_at At4g05553 - - 5e+0 At5g01870 lipid transfer protein, putative O.I. H.G. S.X.
0.47 62.2 HY08D02u_s_at At4g05553 - - 6e+0 At2g31180 MYB14 (MYB DOMAIN PROTEIN 14) O.I. H.G. S.X.
0.39 50.5 Contig14901_at At4g05553 - - 1e+0 At1g24060 unknown protein O.I. H.G. S.X.
0.39 50.5 HT06G21u_s_at At4g05553 - - 1e-8 At2g36530 LOS2 O.I. H.G. S.X.
0.36 47.1 HA26O09r_s_at At4g05553 - - 6e+0 At3g52780 PAP20 O.I. H.G. S.X.
0.36 47.1 Contig9459_at At4g05553 - - 1e-2 At5g54800 GPT1 O.I. H.G. S.X.
0.26 30.4 Contig16073_at At4g05553 - - 3e-2 At5g37200 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.20 21.1 Contig2700_x_at At4g05553 - - 1e+0 At1g23890 NHL repeat-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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