Co-expression analysis

Gene ID PtpAffx.216324.1.S1_x_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g05553: zinc knuckle (CCHC-type) family protein (HF=4e+0)
Module size 6 genes
NF 0.69
%ile 95.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.94PtpAffx.216324.1.S1_x_atpmrna31034hypothetical protein-4e+0At4g05553zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.
0.7794.90.93PtpAffx.7770.2.S1_atDN488472--6e+0At4g12090cornichon family proteinO.I.H.G.S.X.
0.7794.90.94Ptp.3447.1.A1_atDN492951--2e+0At3g06000leucine-rich repeat family proteinO.I.H.G.S.X.
0.6388.10.94PtpAffx.144822.1.S1_atDN500556--1e+0At5g66650unknown proteinO.I.H.G.S.X.
0.5984.90.94PtpAffx.214797.1.S1_atpmrna28647hypothetical protein-3e-34At5g13650elongation factor family proteinO.I.H.G.S.X.
0.4471.90.93PtpAffx.7770.1.A1_atCA934754--4e+0At1g58460unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.299.3GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.395.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.995.1GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.794.7GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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