CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.216254.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g24770: VSP2 (VEGETATIVE STORAGE PROTEIN 2) (HF=1e+1)

Module size 6 genes

NF 0.01

%ile 1.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.75 PtpAffx.216254.1.S1_at pmrna30910 hypothetical protein - 1e+1 At5g24770 VSP2 (VEGETATIVE STORAGE PROTEIN 2) O.I. H.G. S.X.
0.16 26.9 0.88 PtpAffx.42141.1.S1_at CK090701 - - 2e+0 At5g62540 UBC3 (ubiquitin-conjugating enzyme 3) O.I. H.G. S.X.
0.04 6.9 0.84 Ptp.3445.1.S1_at DN502972 - - 1e+0 At5g20910 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.04 6.9 0.89 PtpAffx.144840.1.S1_at DN499480 hypothetical protein - 5e-3 At3g26790 FUS3 (FUSCA 3) O.I. H.G. S.X.
0.01 2.2 0.82 PtpAffx.30435.1.A1_at CV276087 - - 5e+0 At3g14600 60S ribosomal protein L18A (RPL18aC) O.I. H.G. S.X.
- 0.4 0.88 PtpAffx.218577.1.S1_s_at pmrna34240 hypothetical protein - 3e-1 At5g54531 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.33	57.5	0.91	PtpAffx.78598.1.S1_at	CN523388	-	-	3e-1	At4g29980	unknown protein	O.I.	H.G.	S.X.
0.29	50.5	0.85	PtpAffx.211800.1.S1_at	pmrna23140	hypothetical protein	-	2e-28	At2g48060	unknown protein	O.I.	H.G.	S.X.
0.29	50.5	0.89	PtpAffx.225212.1.S1_at	pmrna44385	cc-nbs-lrr resistance protein	-	4e-1	At3g17900	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.82	PtpAffx.205733.1.S1_x_at	pmrna11310	hypothetical protein	-	3e+0	Atcg00800	-	O.I.	H.G.	S.X.
0.12	19.6	0.91	PtpAffx.209170.1.S1_at	pmrna18156	hypothetical protein	-	4e-1	At3g05560	60S ribosomal protein L22-2 (RPL22B)	O.I.	H.G.	S.X.
0.11	18.1	0.89	PtpAffx.217522.1.S1_at	pmrna32817	hypothetical protein	-	2e-3	At5g17350	unknown protein	O.I.	H.G.	S.X.
0.11	18.1	0.91	PtpAffx.206572.1.S1_at	pmrna13040	hypothetical protein	-	1e-4	At4g03140	binding / catalytic/ oxidoreductase	O.I.	H.G.	S.X.
0.10	16.3	0.91	Ptp.2085.2.S1_s_at	CF231740	hypothetical protein	-	2e-30	At1g22300	GRF10 (GENERAL REGULATORY FACTOR 10)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.0 98.0 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.6 97.2 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0 88.0 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8 86.4 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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