Co-expression analysis

Gene ID PtpAffx.216254.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g24770: VSP2 (VEGETATIVE STORAGE PROTEIN 2) (HF=1e+1)
Module size 6 genes
NF 0.01
%ile 1.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.75PtpAffx.216254.1.S1_atpmrna30910hypothetical protein-1e+1At5g24770VSP2 (VEGETATIVE STORAGE PROTEIN 2)O.I.H.G.S.X.
0.1626.90.88PtpAffx.42141.1.S1_atCK090701--2e+0At5g62540UBC3 (ubiquitin-conjugating enzyme 3)O.I.H.G.S.X.
0.046.90.84Ptp.3445.1.S1_atDN502972--1e+0At5g20910zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.046.90.89PtpAffx.144840.1.S1_atDN499480hypothetical protein-5e-3At3g26790FUS3 (FUSCA 3)O.I.H.G.S.X.
0.012.20.82PtpAffx.30435.1.A1_atCV276087--5e+0At3g1460060S ribosomal protein L18A (RPL18aC)O.I.H.G.S.X.
-0.40.88PtpAffx.218577.1.S1_s_atpmrna34240hypothetical protein-3e-1At5g54531unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.098.0GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
5.697.2GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327281Populus balsamifera_20071015_Seedling_continuous_light_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.121102.3.S1_at, orthologous to the query gene, PtpAffx.216254.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6583.9TaAffx.121102.3.S1_atAt5g24770--1e+0At4g28460unknown proteinO.I.H.G.S.X.
0.3448.1TaAffx.113326.1.S1_atAt5g24770--3e+0At1g11280S-locus protein kinase, putativeO.I.H.G.S.X.
0.3142.7TaAffx.78994.1.S1_atAt5g24770--8e-1At3g25930universal stress protein (USP) family proteinO.I.H.G.S.X.
0.2329.0Ta.13671.3.S1_atAt5g24770--3e+0At5g47830unknown proteinO.I.H.G.S.X.
0.1922.4TaAffx.128414.79.S1_x_atAt5g24770--2e-70Atcg00490-O.I.H.G.S.X.
0.1719.8TaAffx.83173.1.S1_atAt5g24770--4e+0At4g30630unknown proteinO.I.H.G.S.X.
0.1719.8Ta.3861.1.S1_x_atAt5g24770--2e+0At5g65870ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)O.I.H.G.S.X.
0.1517.1TaAffx.112817.1.S1_atAt5g24770--1e+0At5g59480haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.1213.3TaAffx.15827.1.S1_atAt5g24770--4e+0At3g07460unknown proteinO.I.H.G.S.X.
0.1112.4TaAffx.114317.1.S1_atAt5g24770--7e-2At1g64200VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3)O.I.H.G.S.X.
0.1011.3TaAffx.113665.1.S1_atAt5g24770--4e-1At1g12520ATCCS (COPPER CHAPERONE FOR SOD1)O.I.H.G.S.X.
0.1011.3TaAffx.12644.1.S1_x_atAt5g24770--4e-1At1g18800NRP2 (NAP1-RELATED PROTEIN 2)O.I.H.G.S.X.
0.0910.4Ta.25319.3.S1_atAt5g24770--2e-5At2g41040methyltransferase-relatedO.I.H.G.S.X.
0.078.6TaAffx.113357.3.S1_atAt5g24770--1e+1At3g06790plastid developmental protein DAG, putativeO.I.H.G.S.X.
0.078.6Ta.20878.3.S1_x_atAt5g24770--2e+1At5g12020HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)O.I.H.G.S.X.
0.067.6TaAffx.109026.1.S1_atAt5g24770--9e-1At4g35165unknown proteinO.I.H.G.S.X.
0.067.6Ta.4255.3.S1_x_atAt5g24770--1e+0At4g11870unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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