Co-expression analysis

Gene ID	PtpAffx.216254.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g24770: VSP2 (VEGETATIVE STORAGE PROTEIN 2) (HF=1e+1)
Module size	6 genes
NF	0.01
%ile	1.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.75	PtpAffx.216254.1.S1_at	pmrna30910	hypothetical protein	-	1e+1	At5g24770	VSP2 (VEGETATIVE STORAGE PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.88	PtpAffx.42141.1.S1_at	CK090701	-	-	2e+0	At5g62540	UBC3 (ubiquitin-conjugating enzyme 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.84	Ptp.3445.1.S1_at	DN502972	-	-	1e+0	At5g20910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.89	PtpAffx.144840.1.S1_at	DN499480	hypothetical protein	-	5e-3	At3g26790	FUS3 (FUSCA 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.82	PtpAffx.30435.1.A1_at	CV276087	-	-	5e+0	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
-	0.4	0.88	PtpAffx.218577.1.S1_s_at	pmrna34240	hypothetical protein	-	3e-1	At5g54531	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.0	98.0	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.6	97.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the rice gene, OsAffx.15537.1.S1_at, orthologous to the query gene, PtpAffx.216254.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Triticum_aestivum

Vitis_vinifera

Zea_mays

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