CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.216254.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g24770: VSP2 (VEGETATIVE STORAGE PROTEIN 2) (HF=1e+1)

Module size 6 genes

NF 0.01

%ile 1.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.75 PtpAffx.216254.1.S1_at pmrna30910 hypothetical protein - 1e+1 At5g24770 VSP2 (VEGETATIVE STORAGE PROTEIN 2) O.I. H.G. S.X.
0.16 26.9 0.88 PtpAffx.42141.1.S1_at CK090701 - - 2e+0 At5g62540 UBC3 (ubiquitin-conjugating enzyme 3) O.I. H.G. S.X.
0.04 6.9 0.84 Ptp.3445.1.S1_at DN502972 - - 1e+0 At5g20910 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.04 6.9 0.89 PtpAffx.144840.1.S1_at DN499480 hypothetical protein - 5e-3 At3g26790 FUS3 (FUSCA 3) O.I. H.G. S.X.
0.01 2.2 0.82 PtpAffx.30435.1.A1_at CV276087 - - 5e+0 At3g14600 60S ribosomal protein L18A (RPL18aC) O.I. H.G. S.X.
- 0.4 0.88 PtpAffx.218577.1.S1_s_at pmrna34240 hypothetical protein - 3e-1 At5g54531 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	99.2	0.75	PtpAffx.216254.1.S1_at	pmrna30910	hypothetical protein	-	1e+1	At5g24770	VSP2 (VEGETATIVE STORAGE PROTEIN 2)	O.I.	H.G.	S.X.
0.16	26.9	0.88	PtpAffx.42141.1.S1_at	CK090701	-	-	2e+0	At5g62540	UBC3 (ubiquitin-conjugating enzyme 3)	O.I.	H.G.	S.X.
0.04	6.9	0.84	Ptp.3445.1.S1_at	DN502972	-	-	1e+0	At5g20910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.04	6.9	0.89	PtpAffx.144840.1.S1_at	DN499480	hypothetical protein	-	5e-3	At3g26790	FUS3 (FUSCA 3)	O.I.	H.G.	S.X.
0.01	2.2	0.82	PtpAffx.30435.1.A1_at	CV276087	-	-	5e+0	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.
-	0.4	0.88	PtpAffx.218577.1.S1_s_at	pmrna34240	hypothetical protein	-	3e-1	At5g54531	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.0 98.0 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.6 97.2 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0 88.0 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8 86.4 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
7.0	98.0	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.6	97.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.C181000032_s_at, orthologous to the query gene, PtpAffx.216254.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.89 93.5 PsAffx.C181000032_s_at At5g24770 - - 1e+1 Atcg00470 - O.I. H.G. S.X.
0.79 90.8 PsAffx.C403000004_at At5g24770 - - 2e+0 At1g27135 - O.I. H.G. S.X.
0.78 90.6 PsAffx.C97000006_s_at At5g24770 - - 5e+0 At5g28295 unknown protein O.I. H.G. S.X.
0.75 89.5 PsAffx.C66000014_at At5g24770 - - 7e+0 At4g09000 14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1) O.I. H.G. S.X.
0.73 88.9 PsAffx.C119000001_at At5g24770 - - 1e+0 At5g61750 cupin family protein O.I. H.G. S.X.
0.72 88.1 PsAffx.C29000042_at At5g24770 - - 2e+0 At4g38930 ubiquitin fusion degradation UFD1 family protein O.I. H.G. S.X.
0.72 88.1 PsAffx.C6000156_at At5g24770 - - 1e+1 At5g10430 AGP4 (ARABINOGALACTAN PROTEIN 4) O.I. H.G. S.X.
0.72 88.1 PsAffx.C106000060_s_at At5g24770 - - 2e+0 At3g49800 BSD domain-containing protein O.I. H.G. S.X.
0.71 87.8 PsAffx.C11000038_at At5g24770 - - 5e+0 At5g07520 GRP18 (GLYCINE-RICH PROTEIN 18) O.I. H.G. S.X.
0.71 87.8 PsAffx.C102000055_s_at At5g24770 - - 9e-1 At1g69190 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase O.I. H.G. S.X.
0.71 87.8 PsAffx.C104000046_at At5g24770 - - 2e+0 At1g10480 ZFP5 (ZINC FINGER PROTEIN 5) O.I. H.G. S.X.
0.71 87.8 PsAffx.C231000010_at At5g24770 - - 9e+0 At1g23730 BCA3 (BETA CARBONIC ANHYDRASE 4) O.I. H.G. S.X.
0.70 87.1 PsAffx.Avr1b-13_at At5g24770 - - 1e+0 At2g10965 unknown protein O.I. H.G. S.X.
0.70 87.1 PsAffx.C17000107_at At5g24770 - - 2e+0 At3g09980 unknown protein O.I. H.G. S.X.
0.70 87.1 PsAffx.C35000107_at At5g24770 - - 1e-1 At4g32780 phosphoinositide binding O.I. H.G. S.X.
0.69 86.8 PsAffx.C2000170_at At5g24770 - - 2e+0 At5g54460 wound-responsive protein-related O.I. H.G. S.X.
0.69 86.8 PsAffx.C85000067_at At5g24770 - - 6e+0 At4g15150 glycine-rich protein O.I. H.G. S.X.
0.69 86.8 PsAffx.C321000008_at At5g24770 - - 2e+0 At4g28750 PSAE-1 (PSA E1 KNOCKOUT) O.I. H.G. S.X.
0.69 86.8 PsAffx.C493000003_at At5g24770 - - 2e+0 At4g21216 unknown protein O.I. H.G. S.X.
0.67 86.1 PsAffx.C7000224_at At5g24770 - - 5e-1 At1g15950 CCR1 (CINNAMOYL COA REDUCTASE 1) O.I. H.G. S.X.
0.67 86.1 PsAffx.C232000019_at At5g24770 - - 7e+0 At5g52470 FIB1 (FIBRILLARIN 1) O.I. H.G. S.X.
0.66 84.0 PsAffx.C209000018_at At5g24770 - - 1e+1 At5g61412 unknown protein O.I. H.G. S.X.
0.66 84.0 PsAffx.C118000032_at At5g24770 - - 1e+0 At1g54410 dehydrin family protein O.I. H.G. S.X.
0.66 84.0 PsAffx.C12000014_at At5g24770 - - 3e-2 At1g01050 AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1) O.I. H.G. S.X.
0.65 83.8 PsAffx.C6000196_s_at At5g24770 - - 8e-1 At5g61430 ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100) O.I. H.G. S.X.
0.65 83.8 PsAffx.C431000001_s_at At5g24770 - - 4e-3 At1g48770 unknown protein O.I. H.G. S.X.
0.64 83.4 PsAffx.C214000022_s_at At5g24770 - - 3e+0 At5g46720 - O.I. H.G. S.X.
0.58 78.8 PsAffx.C241000001_at At5g24770 - - 5e+0 At4g25910 NFU3 O.I. H.G. S.X.
0.54 74.8 PsAffx.C116000003_at At5g24770 - - 1e+0 At5g11830 - O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.89	93.5	PsAffx.C181000032_s_at	At5g24770	-	-	1e+1	Atcg00470	-	O.I.	H.G.	S.X.
0.79	90.8	PsAffx.C403000004_at	At5g24770	-	-	2e+0	At1g27135	-	O.I.	H.G.	S.X.
0.78	90.6	PsAffx.C97000006_s_at	At5g24770	-	-	5e+0	At5g28295	unknown protein	O.I.	H.G.	S.X.
0.75	89.5	PsAffx.C66000014_at	At5g24770	-	-	7e+0	At4g09000	14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1)	O.I.	H.G.	S.X.
0.73	88.9	PsAffx.C119000001_at	At5g24770	-	-	1e+0	At5g61750	cupin family protein	O.I.	H.G.	S.X.
0.72	88.1	PsAffx.C29000042_at	At5g24770	-	-	2e+0	At4g38930	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.
0.72	88.1	PsAffx.C6000156_at	At5g24770	-	-	1e+1	At5g10430	AGP4 (ARABINOGALACTAN PROTEIN 4)	O.I.	H.G.	S.X.
0.72	88.1	PsAffx.C106000060_s_at	At5g24770	-	-	2e+0	At3g49800	BSD domain-containing protein	O.I.	H.G.	S.X.
0.71	87.8	PsAffx.C11000038_at	At5g24770	-	-	5e+0	At5g07520	GRP18 (GLYCINE-RICH PROTEIN 18)	O.I.	H.G.	S.X.
0.71	87.8	PsAffx.C102000055_s_at	At5g24770	-	-	9e-1	At1g69190	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase	O.I.	H.G.	S.X.
0.71	87.8	PsAffx.C104000046_at	At5g24770	-	-	2e+0	At1g10480	ZFP5 (ZINC FINGER PROTEIN 5)	O.I.	H.G.	S.X.
0.71	87.8	PsAffx.C231000010_at	At5g24770	-	-	9e+0	At1g23730	BCA3 (BETA CARBONIC ANHYDRASE 4)	O.I.	H.G.	S.X.
0.70	87.1	PsAffx.Avr1b-13_at	At5g24770	-	-	1e+0	At2g10965	unknown protein	O.I.	H.G.	S.X.
0.70	87.1	PsAffx.C17000107_at	At5g24770	-	-	2e+0	At3g09980	unknown protein	O.I.	H.G.	S.X.
0.70	87.1	PsAffx.C35000107_at	At5g24770	-	-	1e-1	At4g32780	phosphoinositide binding	O.I.	H.G.	S.X.
0.69	86.8	PsAffx.C2000170_at	At5g24770	-	-	2e+0	At5g54460	wound-responsive protein-related	O.I.	H.G.	S.X.
0.69	86.8	PsAffx.C85000067_at	At5g24770	-	-	6e+0	At4g15150	glycine-rich protein	O.I.	H.G.	S.X.
0.69	86.8	PsAffx.C321000008_at	At5g24770	-	-	2e+0	At4g28750	PSAE-1 (PSA E1 KNOCKOUT)	O.I.	H.G.	S.X.
0.69	86.8	PsAffx.C493000003_at	At5g24770	-	-	2e+0	At4g21216	unknown protein	O.I.	H.G.	S.X.
0.67	86.1	PsAffx.C7000224_at	At5g24770	-	-	5e-1	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	O.I.	H.G.	S.X.
0.67	86.1	PsAffx.C232000019_at	At5g24770	-	-	7e+0	At5g52470	FIB1 (FIBRILLARIN 1)	O.I.	H.G.	S.X.
0.66	84.0	PsAffx.C209000018_at	At5g24770	-	-	1e+1	At5g61412	unknown protein	O.I.	H.G.	S.X.
0.66	84.0	PsAffx.C118000032_at	At5g24770	-	-	1e+0	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.
0.66	84.0	PsAffx.C12000014_at	At5g24770	-	-	3e-2	At1g01050	AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1)	O.I.	H.G.	S.X.
0.65	83.8	PsAffx.C6000196_s_at	At5g24770	-	-	8e-1	At5g61430	ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100)	O.I.	H.G.	S.X.
0.65	83.8	PsAffx.C431000001_s_at	At5g24770	-	-	4e-3	At1g48770	unknown protein	O.I.	H.G.	S.X.
0.64	83.4	PsAffx.C214000022_s_at	At5g24770	-	-	3e+0	At5g46720	-	O.I.	H.G.	S.X.
0.58	78.8	PsAffx.C241000001_at	At5g24770	-	-	5e+0	At4g25910	NFU3	O.I.	H.G.	S.X.
0.54	74.8	PsAffx.C116000003_at	At5g24770	-	-	1e+0	At5g11830	-	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	PtpAffx.216254.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g24770: VSP2 (VEGETATIVE STORAGE PROTEIN 2) (HF=1e+1)
Module size	6 genes
NF	0.01
%ile	1.5

Co-expression analysis

Gene ID PtpAffx.216254.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At5g24770: VSP2 (VEGETATIVE STORAGE PROTEIN 2) (HF=1e+1) Module size 6 genes NF 0.01 %ile 1.5

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.216254.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g24770: VSP2 (VEGETATIVE STORAGE PROTEIN 2) (HF=1e+1)

Module size 6 genes

NF 0.01

%ile 1.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays