Co-expression analysis

Gene ID PtpAffx.216254.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g24770: VSP2 (VEGETATIVE STORAGE PROTEIN 2) (HF=1e+1)
Module size 6 genes
NF 0.01
%ile 1.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.75PtpAffx.216254.1.S1_atpmrna30910hypothetical protein-1e+1At5g24770VSP2 (VEGETATIVE STORAGE PROTEIN 2)O.I.H.G.S.X.
0.1626.90.88PtpAffx.42141.1.S1_atCK090701--2e+0At5g62540UBC3 (ubiquitin-conjugating enzyme 3)O.I.H.G.S.X.
0.046.90.84Ptp.3445.1.S1_atDN502972--1e+0At5g20910zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.046.90.89PtpAffx.144840.1.S1_atDN499480hypothetical protein-5e-3At3g26790FUS3 (FUSCA 3)O.I.H.G.S.X.
0.012.20.82PtpAffx.30435.1.A1_atCV276087--5e+0At3g1460060S ribosomal protein L18A (RPL18aC)O.I.H.G.S.X.
-0.40.88PtpAffx.218577.1.S1_s_atpmrna34240hypothetical protein-3e-1At5g54531unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.098.0GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
5.697.2GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327281Populus balsamifera_20071015_Seedling_continuous_light_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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