Co-expression analysis

Gene ID	PtpAffx.216154.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g14900: HMGA (HIGH MOBILITY GROUP A) (HF=5e-2)
Module size	6 genes
NF	0.05
%ile	11.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	69.7	0.75	PtpAffx.216154.1.S1_at	pmrna30765	hypothetical protein	-	5e-2	At1g14900	HMGA (HIGH MOBILITY GROUP A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.79	PtpAffx.2091.1.A1_at	CK088284	hypothetical protein	-	3e+0	At5g44060	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.75	PtpAffx.211210.1.S1_at	pmrna22025	hypothetical protein	-	3e+0	At3g55820	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.74	Ptp.1076.1.S1_at	CK093557	-	-	2e+0	At5g37670	15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.75	PtpAffx.209527.1.S1_at	pmrna18875	hypothetical protein	-	3e-1	At4g38870	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.73	PtpAffx.224027.1.S1_at	pmrna42259	hypothetical protein	-	4e+0	At5g19257	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	97.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3	93.7	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1614986_at, orthologous to the query gene, PtpAffx.216154.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.2	1614986_at	At1g14900	hypothetical protein LOC100261262	-	5e-15	At5g45410	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	1610645_at	At1g14900	hypothetical protein LOC100251896	-	2e-13	At1g61620	phosphoinositide binding	O.I.	H.G.	S.X.	Please select
0.37	51.7	1609350_at	At1g14900	hypothetical protein LOC100241300	-	9e-7	At5g23340	-	O.I.	H.G.	S.X.	Please select
0.37	51.7	1612264_at	At1g14900	-	-	6e-19	At5g52660	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.35	48.5	1611360_s_at	At1g14900	hypothetical protein LOC100264047	-	8e+0	At5g54170	-	O.I.	H.G.	S.X.	Please select
0.35	48.5	1608647_at	At1g14900	hypothetical protein LOC100267012	-	4e+0	At1g70660	MMZ2 (MMS ZWEI HOMOLOGE 2)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1607258_at	At1g14900	hypothetical protein LOC100262258	-	1e-3	At1g20920	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.34	46.8	1615460_at	At1g14900	hypothetical protein LOC100249750	-	2e-91	At1g06700	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.31	41.3	1619228_at	At1g14900	hypothetical protein LOC100248533	-	8e-5	At3g12360	ITN1 (INCREASED TOLERANCE TO NACL)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1606564_at	At1g14900	hypothetical protein LOC100245330	-	1e-2	At3g23710	chloroplast inner membrane import protein Tic22, putative	O.I.	H.G.	S.X.	Please select
0.30	39.4	1620076_s_at	At1g14900	hypothetical protein LOC100254960	-	6e-15	At1g15270	-	O.I.	H.G.	S.X.	Please select
0.29	37.7	1614790_at	At1g14900	hypothetical protein LOC100250406	-	1e+0	At3g04090	SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1622836_s_at	At1g14900	hypothetical protein LOC100256570	-	1e-16	At5g13430	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	O.I.	H.G.	S.X.	Please select
0.26	32.0	1621450_at	At1g14900	hypothetical protein LOC100267985	-	3e-10	At5g40200	DegP9 (DegP protease 9)	O.I.	H.G.	S.X.	Please select
0.26	32.0	1616342_at	At1g14900	hypothetical protein LOC100258259	-	9e-2	At5g18000	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	1621250_at	At1g14900	hypothetical protein LOC100266959	-	3e-51	At5g16780	DOT2 (DEFECTIVELY ORGANIZED TRIBUTARIES 2)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1618618_at	At1g14900	hypothetical protein LOC100255850	-	8e-12	At5g06430	thioredoxin-related	O.I.	H.G.	S.X.	Please select
0.25	30.5	1622597_at	At1g14900	hypothetical protein LOC100244242	-	1e-4	At3g43520	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	1606784_at	At1g14900	hypothetical protein LOC100260339	-	5e-7	At2g46550	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1608903_at	At1g14900	hypothetical protein LOC100245579	-	9e-10	At3g14100	oligouridylate-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.23	27.5	1606469_at	At1g14900	hypothetical protein LOC100261321	-	3e-60	At4g02720	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1612566_at	At1g14900	-	-	4e-128	At2g47170	ARF1A1C	O.I.	H.G.	S.X.	Please select
0.22	25.6	1615700_at	At1g14900	similar to VPS24.1	-	2e-8	At5g22950	VPS24.1	O.I.	H.G.	S.X.	Please select
0.22	25.6	1621909_at	At1g14900	hypothetical protein LOC100262152	-	1e-23	At3g48330	PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.21	24.0	1617194_at	At1g14900	hypothetical protein LOC100264514	-	5e-1	At5g37520	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	1610822_at	At1g14900	hypothetical protein LOC100251604	-	1e-3	At4g17720	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	1620253_at	At1g14900	hypothetical protein LOC100259757	-	0	At3g05530	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)	O.I.	H.G.	S.X.	Please select
0.20	22.4	1607665_a_at	At1g14900	hypothetical protein LOC100265617	-	1e-47	At3g55005	TON1B (tonneau 1b)	O.I.	H.G.	S.X.	Please select
0.20	22.4	1613693_at	At1g14900	hypothetical LOC100255479	-	8e-22	At2g18600	RUB1-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.18	19.4	1608021_at	At1g14900	hypothetical protein LOC100250690	-	6e-1	At3g46620	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.16	16.7	1615023_at	At1g14900	hypothetical protein LOC100257110	-	5e+0	At5g13780	GCN5-related N-acetyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.15	15.6	1608869_s_at	At1g14900	glyceraldehyde-3-phosphate dehydrogenase	-	4e-41	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.14	14.4	1622751_s_at	At1g14900	hypothetical protein LOC100255142	-	5e-31	At4g26840	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)	O.I.	H.G.	S.X.	Please select
0.14	14.4	1609083_at	At1g14900	hypothetical protein LOC100244372	-	4e+0	At5g53950	CUC2 (CUP-SHAPED COTYLEDON 2)	O.I.	H.G.	S.X.	Please select
0.09	9.4	1609981_at	At1g14900	hypothetical protein LOC100247386	-	2e-11	At5g20910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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