CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.216154.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g14900: HMGA (HIGH MOBILITY GROUP A) (HF=5e-2)

Module size 6 genes

NF 0.05

%ile 11.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.43 69.7 0.75 PtpAffx.216154.1.S1_at pmrna30765 hypothetical protein - 5e-2 At1g14900 HMGA (HIGH MOBILITY GROUP A) O.I. H.G. S.X.
0.33 57.5 0.79 PtpAffx.2091.1.A1_at CK088284 hypothetical protein - 3e+0 At5g44060 unknown protein O.I. H.G. S.X.
0.07 11.6 0.75 PtpAffx.211210.1.S1_at pmrna22025 hypothetical protein - 3e+0 At3g55820 - O.I. H.G. S.X.
0.04 6.9 0.74 Ptp.1076.1.S1_at CK093557 - - 2e+0 At5g37670 15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI) O.I. H.G. S.X.
0.03 5.2 0.75 PtpAffx.209527.1.S1_at pmrna18875 hypothetical protein - 3e-1 At4g38870 F-box family protein O.I. H.G. S.X.
0.02 3.6 0.73 PtpAffx.224027.1.S1_at pmrna42259 hypothetical protein - 4e+0 At5g19257 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.5 97.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3 93.7 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5 90.9 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5 90.9 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5 90.9 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5 90.9 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the rice gene, Os07g0488500, orthologous to the query gene, PtpAffx.216154.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.62 81.5 Os07g0488500 At1g14900 - - 2e+0 At5g17400 ER-ANT1 (ENDOPLASMIC RETICULUM-DENINE NUCLEOTIDE TRANSPORTER 1) O.I. H.G. S.X.
0.74 91.4 Os02g0208800 At1g14900 - - 3e+1 At5g27238 - O.I. H.G. S.X.
0.64 83.4 Os11g0444500 At1g14900 - - 1e+1 At5g57450 XRCC3 O.I. H.G. S.X.
0.62 81.5 Os03g0381400 At1g14900 - - 6e-1 At4g24026 unknown protein O.I. H.G. S.X.
0.61 81.2 Os10g0376700 At1g14900 - - 9e-2 At3g59400 GUN4 O.I. H.G. S.X.
0.61 81.2 Os02g0466100 At1g14900 - - 1e+1 At5g64080 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.61 81.2 Os10g0513400 At1g14900 - Cytochrome P450 family protein 5e-2 At1g64940 CYP89A6 O.I. H.G. S.X.
0.61 81.2 Os05g0591950 At1g14900 - - 8e-1 At2g05380 GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM) O.I. H.G. S.X.
0.61 81.2 Os10g0130300 At1g14900 - - 5e-1 At5g55570 unknown protein O.I. H.G. S.X.
0.56 76.3 Os06g0584000 At1g14900 - Pectate lyase/Amb allergen family protein 1e-4 At4g24780 pectate lyase family protein O.I. H.G. S.X.
0.52 69.6 Os01g0820000 At1g14900 - Trans-cinnamate 4-monooxygenase (EC 1.14.13.11)(Cinnamic acid 4- hydroxylase) (CA4H) (C4H) (P450C4H)(Cytochrome P450 73) 1e-17 At2g30490 C4H (CINNAMATE-4-HYDROXYLASE) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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