Co-expression analysis

Gene ID	PtpAffx.216154.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g14900: HMGA (HIGH MOBILITY GROUP A) (HF=5e-2)
Module size	6 genes
NF	0.05
%ile	11.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	69.7	0.75	PtpAffx.216154.1.S1_at	pmrna30765	hypothetical protein	-	5e-2	At1g14900	HMGA (HIGH MOBILITY GROUP A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.79	PtpAffx.2091.1.A1_at	CK088284	hypothetical protein	-	3e+0	At5g44060	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.75	PtpAffx.211210.1.S1_at	pmrna22025	hypothetical protein	-	3e+0	At3g55820	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.74	Ptp.1076.1.S1_at	CK093557	-	-	2e+0	At5g37670	15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.75	PtpAffx.209527.1.S1_at	pmrna18875	hypothetical protein	-	3e-1	At4g38870	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.73	PtpAffx.224027.1.S1_at	pmrna42259	hypothetical protein	-	4e+0	At5g19257	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	97.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3	93.7	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the barley gene, Contig4808_s_at, orthologous to the query gene, PtpAffx.216154.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig4808_s_at	At1g14900	-	-	2e-1	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig13833_at	At1g14900	-	-	7e+0	At2g23310	ATRER1C1	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig2665_s_at	At1g14900	-	-	6e-62	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.29	35.5	HV05G21u_at	At1g14900	-	-	1e+1	At5g12110	elongation factor 1B alpha-subunit 1 (eEF1Balpha1)	O.I.	H.G.	S.X.	Please select
0.23	26.1	HVSMEb0008M09r2_at	At1g14900	-	-	1e-6	At5g17050	UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig13291_s_at	At1g14900	-	-	5e-1	At2g30340	LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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