Co-expression analysis

Gene ID PtpAffx.216154.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g14900: HMGA (HIGH MOBILITY GROUP A) (HF=5e-2)
Module size 6 genes
NF 0.05
%ile 11.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4369.70.75PtpAffx.216154.1.S1_atpmrna30765hypothetical protein-5e-2At1g14900HMGA (HIGH MOBILITY GROUP A)O.I.H.G.S.X.
0.3357.50.79PtpAffx.2091.1.A1_atCK088284hypothetical protein-3e+0At5g44060unknown proteinO.I.H.G.S.X.
0.0711.60.75PtpAffx.211210.1.S1_atpmrna22025hypothetical protein-3e+0At3g55820-O.I.H.G.S.X. kDa class I-related small heat shock protein-like (HSP15.7-CI)O.I.H.G.S.X. protein-3e-1At4g38870F-box family proteinO.I.H.G.S.X. protein-4e+0At5g19257unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.597.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.395.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.393.7GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.590.9GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.590.9GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.590.9GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.590.9GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g14900, orthologous to the query gene, PtpAffx.216154.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.2726.2At1g14900838055HMGA (HIGH MOBILITY GROUP A)Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA.O.I.H.G.S.X.
0.2930.3At1g76540843987CDKB2Encodes a cyclin-dependent protein kinase involved in regulation of the G2/M transition of the mitotic cell cycle. Specifically binds to the cyclin CYCD4;1, expressed in shoot meristem, young leaves and vascular tissue during the G2/M phase. Required for proper organization of the shoot apical meristem and for hormone signaling.O.I.H.G.S.X.
0.2930.3At3g25980822195mitotic spindle checkpoint protein, putative (MAD2)F:DNA binding;P:mitosis, mitotic cell cycle spindle assembly checkpoint;C:endomembrane system;MFOPO.I.H.G.S.X.
0.2930.3At4g05190825867ATK5 (ARABIDOPSIS THALIANA KINESIN 5)ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts.O.I.H.G.S.X.
0.2115.8At1g35780840483unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2115.8At3g27360822357histone H3F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPOO.I.H.G.S.X.
0.1912.7At1g64450842753proline-rich family proteinF:unknown;P:unknown;C:unknown;MBOPFVAO.I.H.G.S.X.
0.1710.2At1g07790837293HTB1Encodes a histone 2B (H2B) protein.O.I.H.G.S.X.
0.168.8At4g38660830022thaumatin, putativeF:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOVO.I.H.G.S.X.
0.157.8At3g20670821614HTA13Encodes HTA13, a histone H2A protein.O.I.H.G.S.X.
0.157.8At3g50070824169CYCD3Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.O.I.H.G.S.X.
0.103.4At3g53760824543tubulin family proteinF:tubulin binding;P:microtubule cytoskeleton organization;C:spindle pole, microtubule organizing center;MFOPO.I.H.G.S.X.

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