CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.216154.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g14900: HMGA (HIGH MOBILITY GROUP A) (HF=5e-2)

Module size 6 genes

NF 0.05

%ile 11.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.43 69.7 0.75 PtpAffx.216154.1.S1_at pmrna30765 hypothetical protein - 5e-2 At1g14900 HMGA (HIGH MOBILITY GROUP A) O.I. H.G. S.X.
0.33 57.5 0.79 PtpAffx.2091.1.A1_at CK088284 hypothetical protein - 3e+0 At5g44060 unknown protein O.I. H.G. S.X.
0.07 11.6 0.75 PtpAffx.211210.1.S1_at pmrna22025 hypothetical protein - 3e+0 At3g55820 - O.I. H.G. S.X.
0.04 6.9 0.74 Ptp.1076.1.S1_at CK093557 - - 2e+0 At5g37670 15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI) O.I. H.G. S.X.
0.03 5.2 0.75 PtpAffx.209527.1.S1_at pmrna18875 hypothetical protein - 3e-1 At4g38870 F-box family protein O.I. H.G. S.X.
0.02 3.6 0.73 PtpAffx.224027.1.S1_at pmrna42259 hypothetical protein - 4e+0 At5g19257 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.5 97.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3 93.7 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5 90.9 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5 90.9 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5 90.9 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5 90.9 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g14900, orthologous to the query gene, PtpAffx.216154.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.27 26.2 At1g14900 838055 HMGA (HIGH MOBILITY GROUP A) Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA. O.I. H.G. S.X.
0.29 30.3 At1g76540 843987 CDKB2 Encodes a cyclin-dependent protein kinase involved in regulation of the G2/M transition of the mitotic cell cycle. Specifically binds to the cyclin CYCD4;1, expressed in shoot meristem, young leaves and vascular tissue during the G2/M phase. Required for proper organization of the shoot apical meristem and for hormone signaling. O.I. H.G. S.X.
0.29 30.3 At3g25980 822195 mitotic spindle checkpoint protein, putative (MAD2) F:DNA binding;P:mitosis, mitotic cell cycle spindle assembly checkpoint;C:endomembrane system;MFOP O.I. H.G. S.X.
0.29 30.3 At4g05190 825867 ATK5 (ARABIDOPSIS THALIANA KINESIN 5) ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts. O.I. H.G. S.X.
0.21 15.8 At1g35780 840483 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.21 15.8 At3g27360 822357 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO O.I. H.G. S.X.
0.19 12.7 At1g64450 842753 proline-rich family protein F:unknown;P:unknown;C:unknown;MBOPFVA O.I. H.G. S.X.
0.17 10.2 At1g07790 837293 HTB1 Encodes a histone 2B (H2B) protein. O.I. H.G. S.X.
0.16 8.8 At4g38660 830022 thaumatin, putative F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOV O.I. H.G. S.X.
0.15 7.8 At3g20670 821614 HTA13 Encodes HTA13, a histone H2A protein. O.I. H.G. S.X.
0.15 7.8 At3g50070 824169 CYCD3 Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development. O.I. H.G. S.X.
0.10 3.4 At3g53760 824543 tubulin family protein F:tubulin binding;P:microtubule cytoskeleton organization;C:spindle pole, microtubule organizing center;MFOP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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