Co-expression analysis

Gene ID	PtpAffx.216111.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g43370: U1 small nuclear ribonucleoprotein 70 kDa, putative (HF=2e+0)
Module size	10 genes
NF	0.29
%ile	52.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.90	PtpAffx.216111.1.S1_s_at	pmrna30694	hypothetical protein	-	2e+0	At2g43370	U1 small nuclear ribonucleoprotein 70 kDa, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.92	PtpAffx.220532.1.S1_at	pmrna36936	hypothetical protein	-	4e-1	At4g00310	EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.91	PtpAffx.108514.1.A1_at	CV237706	-	-	5e-1	At5g15390	tRNA/rRNA methyltransferase (SpoU) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.90	PtpAffx.218958.1.S1_x_at	pmrna34729	hypothetical protein	-	7e+0	At5g65260	polyadenylate-binding protein family protein / PABP family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.90	PtpAffx.107969.2.A1_at	CV258570	-	-	2e-2	At5g66680	DGL1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.90	Ptp.1358.2.A1_at	CK092478	-	-	2e+0	At1g67740	PSBY	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.91	PtpAffx.217772.1.S1_at	pmrna33168	hypothetical protein	-	1e+0	At5g01700	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.91	Ptp.2348.1.S1_at	CK092577	hypothetical protein	-	8e-21	At3g51800	ATG2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.90	PtpAffx.216120.1.S1_s_at	pmrna30706	hypothetical protein	-	3e-3	At1g02640	BXL2 (BETA-XYLOSIDASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.91	PtpAffx.221050.1.S1_x_at	pmrna37608	-	-	1e-1	At4g27590	copper-binding protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.4	97.7	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0	92.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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