Co-expression analysis

Gene ID	PtpAffx.215807.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g15760: calmodulin-binding protein (HF=2e-3)
Module size	6 genes
NF	0.56
%ile	87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	74.6	0.93	PtpAffx.215807.1.S1_at	pmrna30208	hypothetical protein	-	2e-3	At2g15760	calmodulin-binding protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.95	PtpAffx.143215.1.S1_at	CK320242	cytochrome P450	-	7e-3	At1g76180	ERD14 (EARLY RESPONSE TO DEHYDRATION 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.93	PtpAffx.94798.2.A1_a_at	CV261984	1-aminocyclopropane-1-carboxylate	-	2e-5	At1g12010	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	PtpAffx.225395.1.S1_s_at	pmrna44716	hypothetical protein	-	3e-5	At1g61430	S-locus protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	PtpAffx.221947.1.S1_at	pmrna39073	hypothetical protein	-	7e-4	At2g17710	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	PtpAffx.207220.1.S1_at	pmrna14323	hypothetical protein	-	5e-16	At1g56145	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	94.9	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7	91.8	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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