Co-expression analysis

Gene ID	PtpAffx.215694.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g06980: unknown protein (HF=3e+0)
Module size	23 genes
NF	0.18
%ile	34.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	95.3	0.82	PtpAffx.215694.1.S1_at	pmrna30044	hypothetical protein	-	3e+0	At1g06980	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.86	PtpAffx.202018.1.S1_at	pmrna4020	-	-	2e+0	At5g37900	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.86	PtpAffx.203685.1.S1_x_at	pmrna7299	hypothetical protein	-	8e-2	At3g20800	rcd1-like cell differentiation protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.86	PtpAffx.67745.1.A1_at	DN485531	-	-	3e+0	At5g66870	ASL1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.85	Ptp.4242.1.S1_at	BU837221	-	-	4e+0	At5g43980	PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.84	PtpAffx.224608.1.S1_at	pmrna43306	hypothetical protein	-	2e+0	At3g44960	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.86	PtpAffx.29152.1.A1_at	DN486802	-	-	4e+0	At5g17620	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.88	PtpAffx.11311.1.A1_at	CV271219	hypothetical protein	-	7e-2	At1g72600	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.88	PtpAffx.215255.1.S1_at	pmrna29341	hypothetical protein	-	3e-1	At1g01820	PEX11C (PEROXIN 11C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.86	PtpAffx.200069.1.S1_s_at	pmrna126	hypothetical protein	-	1e-1	At1g52470	hydrolase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.86	PtpAffx.208514.1.S1_at	pmrna16896	hypothetical protein	-	2e+0	At4g27657	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.87	PtpAffx.224286.1.S1_at	pmrna42697	hypothetical protein	-	7e-1	At2g29450	ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.87	PtpAffx.24048.1.A1_at	CV276951	hypothetical protein	-	4e-1	At1g74880	NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.87	PtpAffx.209480.1.S1_at	pmrna18801	-	-	2e+0	At3g15900	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.88	PtpAffx.206465.1.S1_at	pmrna12820	hypothetical protein	-	3e+0	At5g40620	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.88	PtpAffx.218477.1.S1_x_at	pmrna34105	hypothetical protein	-	1e+0	At2g21650	MEE3 (MATERNAL EFFECT EMBRYO ARREST 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.86	PtpAffx.217068.1.S1_at	pmrna32203	hypothetical protein	-	3e-1	At3g19950	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.90	PtpAffx.211253.1.S1_x_at	pmrna22088	hypothetical protein	-	5e-35	At1g18070	EF-1-alpha-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.87	PtpAffx.207346.1.S1_at	pmrna14578	hypothetical protein	-	6e-3	At1g43130	LCV2 (LIKE COV 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.88	PtpAffx.220044.1.S1_at	pmrna36313	hypothetical protein	-	5e-1	At5g50335	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.88	PtpAffx.147944.1.S1_at	AJ777676	hypothetical protein	-	3e-1	At4g14930	acid phosphatase survival protein SurE, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.88	PtpAffx.88299.1.A1_at	CV273016	-	-	6e+0	At3g11810	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.86	PtpAffx.221219.1.S1_at	pmrna37938	hypothetical protein	-	3e-1	At1g15680	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	96.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.6	84.5	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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