Co-expression analysis

Gene ID	PtpAffx.215544.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g12360: unknown protein (HF=5e-1)
Module size	8 genes
NF	0.13
%ile	25.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.88	PtpAffx.215544.1.S1_at	pmrna29803	hypothetical protein	-	5e-1	At5g12360	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.90	PtpAffx.224865.1.S1_at	pmrna43750	hypothetical protein	-	7e-14	At1g03540	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.89	Ptp.1591.1.S1_at	CV267457	hypothetical protein	-	3e-24	At3g51260	PAD1 (20s proteasome alpha subunit pad1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.91	PtpAffx.3566.2.S1_at	DN485687	hypothetical protein	-	5e-16	At1g09760	U2A' (U2 small nuclear ribonucleoprotein A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.91	Ptp.3943.1.S1_at	CV250102	hypothetical protein	-	5e-8	At5g43960	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.90	PtpAffx.133902.1.A1_at	CV243404	hypothetical protein	-	1e+0	At2g36110	3'-5' exonuclease domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.90	Ptp.2085.2.S1_s_at	CF231740	hypothetical protein	-	2e-30	At1g22300	GRF10 (GENERAL REGULATORY FACTOR 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.90	PtpAffx.210307.1.S1_at	pmrna20282	hypothetical protein	-	1e-3	At3g49400	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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