Co-expression analysis

Gene ID	PtpAffx.215516.1.S1_at
Gene name	f-box family protein
Homology with Arabidopsis	Similar to At1g28310: Dof-type zinc finger domain-containing protein (HF=3e-23)
Module size	6 genes
NF	0.50
%ile	80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.93	PtpAffx.215516.1.S1_at	pmrna29759	f-box family protein	-	3e-23	At1g28310	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.94	PtpAffx.2489.2.S1_at	CV131015	hypothetical protein	-	3e-2	At3g60340	palmitoyl protein thioesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.93	PtpAffx.156864.1.S1_at	AJ773411	hypothetical protein	-	2e-12	At4g38460	GGR (geranylgeranyl reductase)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.94	PtpAffx.115292.1.S1_at	CA925802	hypothetical protein	-	2e-62	At5g57960	GTP-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.94	PtpAffx.207829.1.S1_at	pmrna15553	hypothetical protein	-	8e-37	At1g79430	APL (ALTERED PHLOEM DEVELOPMENT)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.93	PtpAffx.80659.1.A1_at	BP931662	-	-	9e-1	At5g51410	LUC7 N_terminus domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.5	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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