Co-expression analysis

Gene ID PtpAffx.215422.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g26210: unknown protein (HF=2e-1)
Module size 6 genes
NF 0.01
%ile 2.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4673.70.81PtpAffx.215422.1.S1_atpmrna29591hypothetical protein-2e-1At1g26210unknown proteinO.I.H.G.S.X.
0.0711.60.80PtpAffx.210301.1.S1_x_atpmrna20265GRAS family transcription factor LATERAL-6e-4At1g55580LAS (Lateral Suppressor)O.I.H.G.S.X.
0.012.20.82PtpAffx.216417.1.S1_atpmrna31182hypothetical protein-9e+0At5g19980integral membrane family proteinO.I.H.G.S.X.
0.012.20.81PtpAffx.215152.1.S1_atpmrna29190hypothetical protein-1e+0At1g73040jacalin lectin family proteinO.I.H.G.S.X.
0.012.20.83PtpAffx.221877.1.S1_atpmrna38978hypothetical protein-2e+0At1g516804CL1 (4-COUMARATE:COA LIGASE 1)O.I.H.G.S.X.
0.012.20.80PtpAffx.35306.1.S1_atBU893205--4e+0At2g16594-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.598.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.597.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.397.7GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.697.2GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.092.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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