Co-expression analysis

Gene ID	PtpAffx.215156.1.S1_at
Gene name	ammonium transporter
Homology with Arabidopsis	Similar to At1g64780: ATAMT1 (HF=6e-2)
Module size	13 genes
NF	0.60
%ile	90.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.83	PtpAffx.215156.1.S1_at	pmrna29194	ammonium transporter	-	6e-2	At1g64780	ATAMT1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.69	91.5	0.82	Ptp.7066.1.S1_at	DN487959	-	-	1e-3	At2g36690	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.89	PtpAffx.71071.1.S1_s_at	AJ777574	hypothetical protein	-	6e-15	At1g22170	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.65	88.6	0.86	PtpAffx.222600.1.S1_at	pmrna40132	hypothetical protein	-	6e-1	Atmg00200	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.87	PtpAffx.217262.1.S1_at	pmrna32453	hypothetical protein	-	6e-1	At5g38050	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.88	PtpAffx.153129.1.A1_at	CV268824	hypothetical protein	-	9e-2	At1g49030	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.87	PtpAffx.202047.1.S1_at	pmrna4081	hypothetical protein	-	6e+0	At5g06280	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.89	PtpAffx.215047.1.S1_s_at	pmrna28999	high affinity inorganic phosphate transporter /// high affinity inorganic phosphate transporter	-	9e-12	At5g43350	PHT1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.85	PtpAffx.219484.1.S1_s_at	pmrna35418	high affinity inorganic phosphate transporter /// high affinity inorganic phosphate transporter /// high affinity inorganic phosphate transporter	-	9e-4	At4g08895	inorganic phosphate transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.89	PtpAffx.87267.1.S1_at	CV275322	hypothetical protein	-	4e-1	At1g24267	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.86	PtpAffx.212121.1.S1_at	pmrna23772	hypothetical protein	-	4e-1	At5g43590	patatin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.89	PtpAffx.219485.1.S1_s_at	pmrna35419	high affinity inorganic phosphate transporter	-	4e-12	At5g43370	APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.88	PtpAffx.154690.1.S1_a_at	BU894781	hypothetical protein	-	1e+0	At5g58240	bis(5'-adenosyl)-triphosphatase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	95.8	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.2	95.6	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.2	95.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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