Co-expression analysis

Gene ID PtpAffx.215079.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g23660: transport protein, putative (HF=4e-78)
Module size 6 genes
NF 0.49
%ile 79.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5683.90.94PtpAffx.215079.1.S1_atpmrna29044hypothetical protein-4e-78At3g23660transport protein, putativeO.I.H.G.S.X.
0.5380.50.95PtpAffx.213538.1.S1_x_atpmrna26462hypothetical protein-6e-119At3g09880ATB' BETAO.I.H.G.S.X.
0.4673.70.95PtpAffx.5924.1.A1_atCV240838hypothetical protein-5e-5At1g14250nucleoside phosphatase family protein / GDA1/CD39 family proteinO.I.H.G.S.X.
0.4471.90.95PtpAffx.203871.1.S1_atpmrna7646hypothetical protein-2e+0At3g48185unknown proteinO.I.H.G.S.X.
0.4067.00.96PtpAffx.212713.1.S1_atpmrna24863hypothetical protein-5e-46At1g18260suppressor of lin-12-like protein-related / sel-1 protein-relatedO.I.H.G.S.X.
0.3255.20.94PtpAffx.120784.1.S1_atCV265510hypothetical protein-6e-62At1g14000VIK (VH1-INTERACTING KINASE)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.095.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.684.5GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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