Co-expression analysis

Gene ID PtpAffx.215067.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g21120: unknown protein (HF=3e-5)
Module size 6 genes
NF 0.34
%ile 59.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.96PtpAffx.215067.1.S1_atpmrna29028hypothetical protein-3e-5At2g21120unknown proteinO.I.H.G.S.X.
0.5078.60.96Ptp.4771.1.S1_atBU893475hypothetical protein-1e-10At4g19670zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4369.70.96PtpAffx.141519.1.S1_atAJ774599hypothetical protein-2e-120At5g64070PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1)O.I.H.G.S.X.
0.3153.70.96PtpAffx.161360.1.S1_atCN524282hypothetical protein-1e-1Atmg00270-O.I.H.G.S.X.
0.2950.50.96PtpAffx.84497.1.S1_s_atCF231611hypothetical protein-9e-17At3g18140transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.1830.80.95Ptp.5888.2.S1_a_atCK096684hypothetical protein-4e-118At1g50370serine/threonine protein phosphatase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.293.5GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.987.2GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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