Co-expression analysis

Gene ID PtpAffx.214837.1.S1_at
Gene name white-brown-complex ABC transporter family
Homology with ArabidopsisSimilar to At4g27420: ABC transporter family protein (HF=4e-3)
Module size 19 genes
NF 0.33
%ile 58.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7794.90.90PtpAffx.214837.1.S1_atpmrna28728white-brown-complex ABC transporter family-4e-3At4g27420ABC transporter family proteinO.I.H.G.S.X.
0.5480.80.93PtpAffx.203080.1.S1_atpmrna6095hypothetical protein-3e-24At3g51470protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.4774.60.91Ptp.1906.1.A1_s_atCK092074hypothetical protein-7e-2At2g24070unknown proteinO.I.H.G.S.X.
0.4067.00.92PtpAffx.131325.1.S1_s_atCA824597hypothetical protein-1e-3At5g16390CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)O.I.H.G.S.X.
0.4067.00.93PtpAffx.202007.1.S1_atpmrna4000amino acid transporter-2e-1At1g52040MBP1 (MYROSINASE-BINDING PROTEIN 1)O.I.H.G.S.X.
0.4067.00.94PtpAffx.21546.1.S1_atDN494511hypothetical protein-4e+0At4g01460basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3863.70.94PtpAffx.63071.1.A1_atCV255719--1e-1At4g19200proline-rich family proteinO.I.H.G.S.X.
0.3863.70.91PtpAffx.14861.1.S1_atCV238473--4e-1At3g29070protein transmembrane transporterO.I.H.G.S.X.
0.3357.50.93PtpAffx.204982.1.S1_s_atpmrna9866hypothetical protein-3e-12At5g59790unknown proteinO.I.H.G.S.X.
0.3255.20.92PtpAffx.7814.2.A1_atCV281562hypothetical protein-7e-12At5g47180vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.3153.70.94PtpAffx.201925.1.S1_atpmrna3834hypothetical protein-4e-24At1g34630unknown proteinO.I.H.G.S.X.
0.2950.50.94PtpAffx.153966.2.A1_atCV235142hypothetical protein-1e-7At1g65320CBS domain-containing proteinO.I.H.G.S.X.
0.2950.50.94Ptp.5560.1.A1_atCK087847hypothetical protein-5e+0At5g52040ATRSP41O.I.H.G.S.X.
0.2950.50.92PtpAffx.213868.1.S1_atpmrna27051hypothetical protein-3e-46At3g27440uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putativeO.I.H.G.S.X.
0.2543.60.93PtpAffx.59806.1.A1_atCV266955hypothetical protein-1e-8At5g09590MTHSC70-2 (MITOCHONDRIAL HSP70 2)O.I.H.G.S.X.
0.2034.60.93PtpAffx.213660.1.S1_atpmrna26674hypothetical protein-6e-29At3g51770ETO1 (ETHYLENE OVERPRODUCER 1)O.I.H.G.S.X.
0.2034.60.93PtpAffx.3546.1.A1_atCV241865hypothetical protein-3e-33At5g10730binding / catalytic/ coenzyme bindingO.I.H.G.S.X.
0.2034.60.92Ptp.7375.2.A1_atCV233091--4e-2At1g31160zinc-binding protein, putative / protein kinase C inhibitor, putativeO.I.H.G.S.X.
0.1729.10.94PtpAffx.14532.1.A1_atCK090232hypothetical protein-3e-2At5g64020unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.794.7GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage