Co-expression analysis

Gene ID	PtpAffx.214817.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g53860: emb2737 (embryo defective 2737) (HF=1e-2)
Module size	6 genes
NF	0.48
%ile	78.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.91	PtpAffx.214817.1.S1_at	pmrna28680	hypothetical protein	-	1e-2	At5g53860	emb2737 (embryo defective 2737)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.91	PtpAffx.225864.1.S1_at	pmrna45498	hypothetical protein	-	1e+0	At4g16500	cysteine protease inhibitor family protein / cystatin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.91	PtpAffx.215276.1.S1_at	pmrna29369	-	-	2e+0	At4g20520	RNA binding / RNA-directed DNA polymerase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.92	PtpAffx.221803.1.S1_at	pmrna38862	hypothetical protein	-	1e+1	At5g48480	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.90	PtpAffx.217157.1.S1_at	pmrna32308	hypothetical protein	-	4e+1	At5g57000	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.90	PtpAffx.217331.1.S1_at	pmrna32547	hypothetical protein	-	1e+0	At1g05290	transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.0	97.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, Gma.1152.1.S1_a_at, orthologous to the query gene, PtpAffx.214817.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.9	Gma.1152.1.S1_a_at	At5g53860	-	-	9e-36	At1g71820	SEC6	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.6941.1.S1_at	At5g53860	-	-	1e-2	At3g07950	rhomboid protein-related	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.32352.1.S1_at	At5g53860	-	-	4e-12	At3g55610	P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2)	O.I.	H.G.	S.X.	Please select
0.26	33.9	GmaAffx.58405.1.S1_at	At5g53860	-	-	2e-5	At2g40730	HEAT repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.14	17.5	GmaAffx.57881.1.S1_at	At5g53860	-	-	8e-3	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	O.I.	H.G.	S.X.	Please select
0.12	15.1	Gma.6890.1.A1_s_at	At5g53860	-	-	1e-1	At2g31710	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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