Co-expression analysis

Gene ID	PtpAffx.214777.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g33850: 40S ribosomal protein S15, putative (HF=1e+1)
Module size	8 genes
NF	0.02
%ile	5.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.5	0.75	PtpAffx.214777.1.S1_at	pmrna28621	hypothetical protein	-	1e+1	At1g33850	40S ribosomal protein S15, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.90	PtpAffx.71504.1.S1_a_at	CK091854	hypothetical protein	-	4e-1	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.83	PtpAffx.156588.1.S1_at	DN501982	hypothetical protein	-	5e-9	Atmg00290	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.85	Ptp.75.2.S1_at	BI126224	hypothetical protein	-	1e-4	At5g42000	ORMDL family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.85	PtpAffx.29897.1.S1_at	CV243850	-	-	2e-3	At3g60050	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.83	PtpAffx.811.5.A1_at	CV271621	hypothetical protein	-	4e+0	At2g35790	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.85	PtpAffx.95913.1.A1_at	CV228094	hypothetical protein	-	4e-4	At4g32910	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.78	PtpAffx.209299.1.S1_at	pmrna18381	hypothetical protein	-	4e-1	At3g18280	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4	94.0	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3	93.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage