Co-expression analysis

Gene ID	PtpAffx.214538.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g62320: nucleic acid binding (HF=5e+0)
Module size	12 genes
NF	0.87
%ile	99.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.58	84.2	0.94	PtpAffx.214538.1.S1_s_at	pmrna28252	hypothetical protein	-	5e+0	At3g62320	nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.97	PtpAffx.24159.1.A1_at	CA923426	hypothetical protein	-	9e-3	At1g70410	carbonic anhydrase, putative / carbonate dehydratase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.98	PtpAffx.18976.1.A1_at	CV226921	hypothetical protein	-	1e+1	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.98	PtpAffx.24159.1.A1_x_at	CA923426	hypothetical protein	-	9e-3	At1g70410	carbonic anhydrase, putative / carbonate dehydratase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.98	PtpAffx.2386.3.S1_at	CV274142	hypothetical protein	-	2e+0	At4g03150	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.87	97.5	0.98	PtpAffx.222219.1.S1_at	pmrna39489	-	-	5e-3	At3g22020	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.87	97.5	0.98	PtpAffx.128798.1.S1_at	CN520667	hypothetical protein	-	2e-15	At5g41080	glycerophosphoryl diester phosphodiesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.85	97.2	0.97	PtpAffx.127432.1.A1_at	CV257984	hypothetical protein	-	4e-4	At1g68725	AGP19 (ARABINOGALACTAN-PROTEIN 19)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.97	PtpAffx.6273.1.S1_at	CV264184	-	-	1e+1	At5g05910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.98	PtpAffx.210801.1.S1_x_at	pmrna21209	hypothetical protein	-	4e+0	At5g05770	WOX7 (WUSCHEL-RELATED HOMEOBOX 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.97	PtpAffx.126213.1.S1_s_at	CV274136	-	-	5e+0	At5g56120	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.98	PtpAffx.210801.1.S1_at	pmrna21209	hypothetical protein	-	4e+0	At5g05770	WOX7 (WUSCHEL-RELATED HOMEOBOX 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.7	98.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
9.3	98.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.9	98.0	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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