Co-expression analysis

Gene ID PtpAffx.214531.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g20550: oxidoreductase, 2OG-Fe(II) oxygenase family protein (HF=1e-7)
Module size 6 genes
NF 0.78
%ile 98.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.96PtpAffx.214531.1.S1_atpmrna28244hypothetical protein-1e-7At5g20550oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.8096.00.97PtpAffx.213719.1.S1_atpmrna26773hypothetical protein-2e-48At3g51630WNK5 (WITH NO LYSINE (K) KINASE 5)O.I.H.G.S.X.
0.7794.90.96PtpAffx.77546.1.S1_s_atBI127036hypothetical protein-3e-1At5g12310zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6791.10.96PtpAffx.795.1.A1_atCV273354hypothetical protein-5e+0At5g59480haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.6791.10.97Ptp.7056.1.S1_atBU884296hypothetical protein-8e-1At5g39240unknown proteinO.I.H.G.S.X.
0.5078.60.97PtpAffx.149843.1.S1_atBU894284--4e+0At2g45280ATRAD51CO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.996.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.694.5GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.494.0GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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