Co-expression analysis

Gene ID PtpAffx.214395.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g30270: MERI5B (meristem-5) (HF=2e-24)
Module size 6 genes
NF 0.25
%ile 44.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.94PtpAffx.214395.1.S1_atpmrna28007hypothetical protein-2e-24At4g30270MERI5B (meristem-5)O.I.H.G.S.X.
0.8397.00.94PtpAffx.112384.1.S1_s_atDN500495hypothetical protein-3e-7At3g23730xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeO.I.H.G.S.X.
0.3357.50.94PtpAffx.215737.1.S1_atpmrna30101ABC transporter family, retinal flippase subfamily-2e-18At5g61730ATATH11O.I.H.G.S.X.
0.1626.90.95PtpAffx.224466.1.S1_atpmrna43028hypothetical protein-1e-3At5g23350GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.
0.1219.60.94PtpAffx.29131.1.S1_a_atBU862040hypothetical protein-2e+0At5g07060zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.1219.60.95PtpAffx.112384.1.S1_atDN500495--3e-7At3g23730xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.1GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.295.6GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.892.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.590.9GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.088.0GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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