Co-expression analysis

Gene ID PtpAffx.214394.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g30270: MERI5B (meristem-5) (HF=8e-18)
Module size 6 genes
NF 0.05
%ile 11.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.86PtpAffx.214394.1.S1_atpmrna28006hypothetical protein-8e-18At4g30270MERI5B (meristem-5)O.I.H.G.S.X.
0.0914.60.88PtpAffx.1601.3.S1_x_atCV225715hypothetical protein-1e-23At3g09390MT2A (METALLOTHIONEIN 2A)O.I.H.G.S.X.
0.058.30.87PtpAffx.19737.1.A1_atBP932437hypothetical protein-1e-3At1g49820ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)O.I.H.G.S.X.
0.058.30.88PtpAffx.121350.1.S1_atCV243433serine/threonine protein kinase 4, CTR4-4e-1At2g15130plant basic secretory protein (BSP) family proteinO.I.H.G.S.X.
0.035.20.87PtpAffx.201372.1.S1_x_atpmrna2709hypothetical protein-1e+0At5g39950ATTRX2 (THIOREDOXIN 2)O.I.H.G.S.X.
0.035.20.86PtpAffx.221758.1.S1_s_atpmrna38803hypothetical protein-3e+0At5g08505-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.698.6GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
6.497.7GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.694.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.987.2GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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