Co-expression analysis

Gene ID PtpAffx.214372.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g28140: calmodulin-binding protein (HF=2e+0)
Module size 6 genes
NF 0.67
%ile 94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.91PtpAffx.214372.1.S1_atpmrna27964hypothetical protein-2e+0At3g28140calmodulin-binding proteinO.I.H.G.S.X.
0.6791.10.90PtpAffx.59867.2.S1_s_atCV282236hypothetical protein-4e-1Atcg01270-O.I.H.G.S.X.
0.6791.10.91PtpAffx.212465.1.S1_atpmrna24423hypothetical protein-2e+0At5g35945unknown proteinO.I.H.G.S.X.
0.6086.00.91PtpAffx.94975.1.A1_atCV264804--3e-1At3g04400emb2171 (embryo defective 2171)O.I.H.G.S.X.
0.5582.20.91PtpAffx.203545.1.S1_atpmrna7036hypothetical protein-3e-2At5g10220ANN6 (ANNEXIN ARABIDOPSIS 6)O.I.H.G.S.X.
0.4268.60.90PtpAffx.203397.1.S1_atpmrna6756hypothetical protein-1e-23At1g28110SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.098.4GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.996.5GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.896.4GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.684.5GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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