Co-expression analysis

Gene ID PtpAffx.214321.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g31310: avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related (HF=2e+0)
Module size 6 genes
NF 0.02
%ile 4.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5380.50.78PtpAffx.214321.1.S1_atpmrna27853hypothetical protein-2e+0At4g31310avirulence-responsive protein-related / avirulence induced gene (AIG) protein-relatedO.I.H.G.S.X.
0.0711.60.75PtpAffx.24528.1.A1_atCV256754--3e-2At4g19880-O.I.H.G.S.X.
0.046.90.78PtpAffx.18179.1.S1_atCX177780hypothetical protein-4e+0At5g26100unknown proteinO.I.H.G.S.X.
0.023.60.75PtpAffx.40513.1.S1_atBU879293hypothetical protein-7e-2At5g07630lipid transporterO.I.H.G.S.X.
0.012.20.79PtpAffx.134679.1.A1_atCV226519--3e+0At3g23600dienelactone hydrolase family proteinO.I.H.G.S.X.
0.012.20.78PtpAffx.225708.1.S1_s_atpmrna45265hypothetical protein-4e-1At5g49480ATCP1 (Ca2+-binding protein 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.594.3GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.092.9GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.791.8GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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