Co-expression analysis

Gene ID	PtpAffx.214257.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g02230: AtPP2-B1 (Phloem protein 2-B1) (HF=8e-2)
Module size	6 genes
NF	0.28
%ile	49.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	0.89	PtpAffx.214257.1.S1_at	pmrna27740	hypothetical protein	-	8e-2	At2g02230	AtPP2-B1 (Phloem protein 2-B1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.90	PtpAffx.217155.1.S1_at	pmrna32306	hypothetical protein	-	2e+1	At2g36030	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.89	Ptp.7803.1.S1_at	DN499451	-	-	1e+0	Atmg01150	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.89	PtpAffx.140892.2.A1_a_at	CV241766	-	-	3e-1	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.89	PtpAffx.139528.2.A1_at	CV228130	-	-	4e-10	At3g08570	protein binding / signal transducer	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.89	PtpAffx.212550.1.S1_at	pmrna24587	NAC domain protein, IPR003441	-	2e+0	At5g62850	AtVEX1 (VEGETATIVE CELL EXPRESSED1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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