Co-expression analysis

Gene ID	PtpAffx.214190.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g03330: OTU-like cysteine protease family protein (HF=1e+1)
Module size	6 genes
NF	0.33
%ile	58.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.86	PtpAffx.214190.1.S1_at	pmrna27608	hypothetical protein	-	1e+1	At5g03330	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.88	PtpAffx.46493.2.S1_at	BP936198	-	-	1e-9	At4g25700	BETA-OHASE 1 (BETA-HYDROXYLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.88	PtpAffx.219740.1.S1_at	pmrna35767	AP2 domain-containing transcription factor	-	2e-1	At1g18790	RWP-RK domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.89	Ptp.2724.1.S1_s_at	DN503650	hypothetical protein	-	2e+0	At3g06455	splicing factor-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.86	PtpAffx.202245.1.S1_at	pmrna4500	hypothetical protein	-	3e-15	At2g46270	GBF3 (G-BOX BINDING FACTOR 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.89	PtpAffx.215243.1.S1_at	pmrna29321	hypothetical protein	-	7e-52	At4g03410	peroxisomal membrane protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.8	98.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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