Co-expression analysis

Gene ID	PtpAffx.214087.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g33230: pectinesterase family protein (HF=3e-10)
Module size	22 genes
NF	0.72
%ile	97.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	94.1	1.00	PtpAffx.214087.1.S1_at	pmrna27425	hypothetical protein	-	3e-10	At4g33230	pectinesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.93	99.5	1.00	PtpAffx.218300.1.S1_at	pmrna33866	hypothetical protein	-	6e+0	Atmg00820	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	1.00	PtpAffx.202816.1.S1_at	pmrna5585	hypothetical protein	-	5e-2	At3g62170	VGDH2 (Vanguard 1 homolog 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.82	96.3	1.00	PtpAffx.207518.1.S1_at	pmrna14929	hypothetical protein	-	5e-24	At5g20940	glycosyl hydrolase family 3 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	1.00	PtpAffx.221525.1.S1_at	pmrna38453	hypothetical protein	-	8e-18	At3g13850	LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.79	95.3	1.00	PtpAffx.202346.1.S1_at	pmrna4712	hypothetical protein	-	3e-3	At1g80170	polygalacturonase, putative / pectinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.75	94.1	1.00	PtpAffx.208843.1.S1_at	pmrna17537	hypothetical protein	-	2e-9	At1g14700	PAP3 (PURPLE ACID PHOSPHATASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.75	94.1	1.00	PtpAffx.214292.1.S1_at	pmrna27797	hypothetical protein	-	1e-4	At5g45670	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	1.00	PtpAffx.2599.1.S1_at	BU878107	hypothetical protein	-	1e+0	At5g54430	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.72	92.7	1.00	PtpAffx.204306.1.S1_at	pmrna8471	hypothetical protein	-	2e-20	At4g35010	BGAL11 (beta-galactosidase 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.72	92.7	1.00	PtpAffx.211713.1.S1_at	pmrna22954	hypothetical protein	-	2e+0	At5g15800	SEP1 (SEPALLATA1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.72	92.7	1.00	PtpAffx.202813.1.S1_at	pmrna5580	hypothetical protein	-	5e-2	At3g59010	pectinesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	1.00	PtpAffx.214988.1.S1_s_at	pmrna28924	hypothetical protein	-	1e+0	At2g30390	FC2 (FERROCHELATASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.70	91.7	1.00	PtpAffx.203969.1.S1_at	pmrna7831	hypothetical protein	-	9e-6	At3g03430	polcalcin, putative / calcium-binding pollen allergen, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.70	91.7	1.00	PtpAffx.210944.1.S1_s_at	pmrna21507	hypothetical protein	-	4e+0	At3g03900	adenylylsulfate kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.69	91.5	1.00	PtpAffx.206513.1.S1_s_at	pmrna12918	hypothetical protein	-	2e-3	At5g07420	pectinesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	1.00	PtpAffx.200574.1.S1_at	pmrna1144	hypothetical protein	-	1e-2	At2g47040	VGD1 (VANGUARD1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	1.00	PtpAffx.78911.1.S1_at	BU877496	hypothetical protein	-	3e-1	At4g24470	TIFY1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	1.00	PtpAffx.204033.1.S1_at	pmrna7957	hypothetical protein	-	5e-11	At2g23900	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	1.00	PtpAffx.210546.1.S1_at	pmrna20685	hypothetical protein	-	5e-4	At1g24110	peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	1.00	PtpAffx.222676.1.S1_at	pmrna40232	hypothetical protein	-	4e-95	At2g13680	CALS5 (CALLOSE SYNTHASE 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	1.00	PtpAffx.220129.1.S1_at	pmrna36471	hypothetical protein	-	1e+0	At3g07460	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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