Co-expression analysis

Gene ID	PtpAffx.214066.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g32980: ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1) (HF=2e-16)
Module size	7 genes
NF	0.14
%ile	26.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.86	PtpAffx.214066.1.S1_s_at	pmrna27397	hypothetical protein	-	2e-16	At4g32980	ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.89	Ptp.3120.1.S1_x_at	CF936283	hypothetical protein	-	9e+0	At5g47770	FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.90	PtpAffx.7311.1.S1_at	CK091290	hypothetical protein	-	2e-7	At5g23940	EMB3009 (embryo defective 3009)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.88	Ptp.3120.1.S1_at	CF936283	hypothetical protein	-	9e+0	At5g47770	FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.88	Ptp.5890.1.S1_at	CK108981	-	-	8e-8	At5g16030	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.88	PtpAffx.222272.1.S1_at	pmrna39575	hypothetical protein	-	1e-86	At4g17300	NS1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.87	PtpAffx.24009.1.A1_at	CV279164	-	-	3e-2	At3g12750	ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.1	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.4	95.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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